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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttttctcaaatatgaccaaaaacttttggaagatcaatgtactgttgatgggatcttgattaggtctctctggttttgttgttgggtgtgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAAGCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAA

Basic information

species Arabidopsis thaliana
transcript AT1G20020.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86065483|gb|DR361240.1|DR361240
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|125225508|gb|EL239593.1|EL239593
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGG
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGG
EST: gi|86065472|gb|DR361229.1|DR361229
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065479|gb|DR361236.1|DR361236
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065446|gb|DR361203.1|DR361203
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065487|gb|DR361244.1|DR361244
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065484|gb|DR361241.1|DR361241
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|124950368|gb|EL025837.1|EL025837
EST:     TTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065476|gb|DR361233.1|DR361233
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065474|gb|DR361231.1|DR361231
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065458|gb|DR361215.1|DR361215
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065471|gb|DR361228.1|DR361228
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065447|gb|DR361204.1|DR361204
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|125097642|gb|EL154038.1|EL154038
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTG
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTG
EST: gi|86065449|gb|DR361206.1|DR361206
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065456|gb|DR361213.1|DR361213
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065452|gb|DR361209.1|DR361209
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065467|gb|DR361224.1|DR361224
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065475|gb|DR361232.1|DR361232
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGNAAG-ATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065450|gb|DR361207.1|DR361207
EST:     TTCCCGCTACAHBTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065445|gb|DR361202.1|DR361202
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|124741595|gb|EH832757.1|EH832757
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGT
EST: gi|86065491|gb|DR361248.1|DR361248
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065459|gb|DR361216.1|DR361216
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065455|gb|DR361212.1|DR361212
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065470|gb|DR361227.1|DR361227
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065488|gb|DR361245.1|DR361245
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAG-ATCAGGTTTACTAAA                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065489|gb|DR361246.1|DR361246
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065468|gb|DR361225.1|DR361225
EST:     TTCCTGCTACAAGTTGTGCCATTGCTCCTGAAAG-ATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065492|gb|DR361249.1|DR361249
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065493|gb|DR361250.1|DR361250
EST:     TTCCCGCTACAAGTTGTGCSATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065460|gb|DR361217.1|DR361217
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065448|gb|DR361205.1|DR361205
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065462|gb|DR361219.1|DR361219
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065457|gb|DR361214.1|DR361214
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065480|gb|DR361237.1|DR361237
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065454|gb|DR361211.1|DR361211
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065463|gb|DR361220.1|DR361220
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065477|gb|DR361234.1|DR361234
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065485|gb|DR361242.1|DR361242
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065481|gb|DR361238.1|DR361238
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|47829155|gb|CK118839.1|CK118839
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065465|gb|DR361222.1|DR361222
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAG-ATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065461|gb|DR361218.1|DR361218
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065490|gb|DR361247.1|DR361247
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065453|gb|DR361210.1|DR361210
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065473|gb|DR361230.1|DR361230
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|125145410|gb|EL180607.1|EL180607
EST:     TGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065478|gb|DR361235.1|DR361235
EST:     TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
EST: gi|86065486|gb|DR361243.1|DR361243
EST:     TTCCCGSTACAAGTTGTGCCATTGCTCCTGAAA-GATCAGGTTTACTAAG                         GGTGSTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT
genomic: TTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAGgtactttata ... tgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgatgggatcttgattaggtctctctggttttgttgttgggtgtgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAAGCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAA
          tcttgat  putative branch site (score: 4)
                                             tgtttaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttttctcaaatatgaccaaaaacttttggaagatcaatgtactgttgatgggatcttgattaggtctctctggttttgttgttgggtgtgtttaaaagGGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAAGCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAA

- - -tctcaaa
- - - - - - - - - caaaaac
- - - - - - - - - - - - - - - -aagatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg