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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgattttgtgaaccgagttagggttaagagatggggtgatgttggatactaaaagttttaattttgacacttgaatgtttctgggttctgcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTCGAAA

Basic information

species Arabidopsis thaliana
transcript AT1G19660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052196|gb|DR347953.1|DR347953
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052203|gb|DR347960.1|DR347960
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052205|gb|DR347962.1|DR347962
EST:     CCTTTAGTTCCTCTGTTGAT-TATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|116471465|gb|EG514057.1|EG514057
EST:     CGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052182|gb|DR347939.1|DR347939
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGNGTTCG-CN
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTC-
EST: gi|86052184|gb|DR347941.1|DR347941
EST:     AGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: AGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052189|gb|DR347946.1|DR347946
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052191|gb|DR347948.1|DR347948
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052206|gb|DR347963.1|DR347963
EST:     CCTTTAGTTCCTCTGTTGAT-TATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052187|gb|DR347944.1|DR347944
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052192|gb|DR347949.1|DR347949
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052190|gb|DR347947.1|DR347947
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|124941906|gb|EL018219.1|EL018219
EST:     CTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052204|gb|DR347961.1|DR347961
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052200|gb|DR347957.1|DR347957
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052188|gb|DR347945.1|DR347945
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052183|gb|DR347940.1|DR347940
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052201|gb|DR347958.1|DR347958
EST:     CTTTAGTTCCTCTGTTGATCTATSCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CTTTAGTTCCTCTGTTGATCTAT-CCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052186|gb|DR347943.1|DR347943
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052195|gb|DR347952.1|DR347952
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052193|gb|DR347950.1|DR347950
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052207|gb|DR347964.1|DR347964
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052202|gb|DR347959.1|DR347959
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052208|gb|DR347965.1|DR347965
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052197|gb|DR347954.1|DR347954
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|86052194|gb|DR347951.1|DR347951
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCC
EST: gi|152033793|gb|BP816189.2|BP816189
EST:     CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCG                         AGTGAAGATGAGGTCGCTTCAAGCACCGGCTGGTTTGCCCTAGTGTTCGTC
genomic: CCTTTAGTTCCTCTGTTGATCTATCCAATCGAATCTTACGAAAATTTTCGgtaaagtttc ... gcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGG-TTGTTTGCCCTAGTGTTCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatactaaaagttttaattttgacacttgaatgtttctgggttctgcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTCGAAA
     taaaagttttaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgattttgtgaaccgagttagggttaagagatggggtgatgttggatactaaaagttttaattttgacacttgaatgtttctgggttctgcatcaaaagAGTGAAGATGAGGTCGCTTCAAGCACCGGTTGTTTGCCCTAGTGTTCGTCCCAGACAATTGGGTGTCTCTGCTTTACTTGTCAACTGCTCTGTTTCGAAA

- gattttg
- - - - - gaaccga
- - - - - - - - - - - - - - - - - - - - - - - - actaaaa