Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116486415|gb|EG529007.1|EG529007EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST:
gi|125193990|gb|EL208944.1|EL208944EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGG
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGG
EST:
gi|86086077|gb|DR381836.1|DR381836EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST:
gi|116486423|gb|EG529015.1|EG529015EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST:
gi|19743163|gb|AU228516.1|AU228516EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATTTGGGATTTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST:
gi|19876614|gb|AU237445.1|AU237445EST: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcttccaaaattggtctttcaaaattttgagaaattttaaaaattctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTCTGGCGAGAAGCTTTCGAAG
tctttcaaaattttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgaatttattcataaattattattgatttttgttttcttccaaaattggtctttcaaaattttgagaaattttaaaaattctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTCTGGCGAGAAGCTTTCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC