Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaatttattcataaattattattgatttttgttttcttccaaaattggtctttcaaaattttgagaaattttaaaaattctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTCTGGCGAGAAGCTTTCGAAG

Basic information

species Arabidopsis thaliana
transcript AT1G19380.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486415|gb|EG529007.1|EG529007
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST: gi|125193990|gb|EL208944.1|EL208944
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGG
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGG
EST: gi|86086077|gb|DR381836.1|DR381836
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST: gi|116486423|gb|EG529015.1|EG529015
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST: gi|19743163|gb|AU228516.1|AU228516
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATTTGGGATTTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
EST: gi|19876614|gb|AU237445.1|AU237445
EST:     CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTG                         GAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA
genomic: CTGCTGACGGCGTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGgtacgaattt ... attctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttccaaaattggtctttcaaaattttgagaaattttaaaaattctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTCTGGCGAGAAGCTTTCGAAG
                 tctttcaaaattttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgaatttattcataaattattattgatttttgttttcttccaaaattggtctttcaaaattttgagaaattttaaaaattctgacagGAAATTGAAGAGAGAGAGAAAGTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTCTGGCGAGAAGCTTTCGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC