Sequence
atgc intronic sequence ATGC exonic sequence...ctacctttcagattggagacgcgattccaattggagaagagtatcagatggaagaagcggttcgagcctcgttggaggagaccaataatattagtttgagGCCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G18770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agatggaagaagcggttcgagcctcgttggaggagaccaataatattagtttgagGCCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTT
aataatattagtttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctacctttcagattggagacgcgattccaattggagaagagtatcagatggaagaagcggttcgagcctcgttggaggagaccaataatattagtttgagGCCCGCAAGCAAGCTCGTGGTCAAGTCTTTAGCCAGGAAGATATACAAGATGACCACTAGTTCTACTGGTGAAATGTGCATAATTTGTTTGGAAGAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - ctttcag
- - - - - - - - - - - -attccaa
- - - - - - - - - - - - - - - - -gagaaga
- - - - - - - - - - - - - - - - - - - - - - - - - gaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaccaa