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...tttagaggtatgcatttaccaatgactttcacgaaaccaaaaggattcagctttttacttgggtctgataaaaaatatttctgtatttggggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCAT
species | Arabidopsis thaliana |
transcript | AT1G18470.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGEST: gi|86039336|gb|DR335091.1|DR335091
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGEST: gi|86039338|gb|DR335093.1|DR335093
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCEST: gi|116478068|gb|EG520660.1|EG520660
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGC
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGEST: gi|86039335|gb|DR335090.1|DR335090
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
EST: ACGCTTTTATTGGTGCTTAANCTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGEST: gi|86039337|gb|DR335092.1|DR335092
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGEST: gi|152035998|gb|AU237167.2|AU237167
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
EST: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTG GATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
genomic: ACGCTTTTATTGGTGCTTAAACTCGATCACACCGTCTCTTCCTCATGGTGgttagtctct ... ggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAG
ttcagctttttacttgggtctgataaaaaatatttctgtatttggggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCAT
gtctgat putative branch site (score: 4)
tgataaaaaatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagaggtatgcatttaccaatgactttcacgaaaccaaaaggattcagctttttacttgggtctgataaaaaatatttctgtatttggggttatgcagGATGGTGTTTTTCCCGCTGTGGGCTTTTCATGCAGTTGTTGCAAGGGGCAGATTCTCTCTTCCTGCTCCTGTTGCTCCACGTAACCGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - -ttaccaa
- - - - - - - - - - - - - - - - - aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatttgg