1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aatatactagctgcacctcaaggttattatgtgtttagctcctacaatttagtggtgacttctgatgtaatgattctgtttgcacacatttcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAA
species | Arabidopsis thaliana |
transcript | AT1G17720.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAG TTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAAEST: gi|116432328|gb|EG474920.1|EG474920
genomic: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGgtaattattg ... tcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAA
EST: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAG TTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAAEST: gi|116478422|gb|EG521014.1|EG521014
genomic: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGgtaattattg ... tcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAA
EST: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAG TTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAA
genomic: ATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGgtaattattg ... tcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAA
aatttagtggtgacttctgatgtaatgattctgtttgcacacatttcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAA
ttctgat putative branch site (score: 3)
catttcttcc putative PPT
taatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatactagctgcacctcaaggttattatgtgtttagctcctacaatttagtggtgacttctgatgtaatgattctgtttgcacacatttcttccgcagTTGACATCATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGCCGAGTAGTTCTTTTTGAAAGGACAGATACTAA
- - - - - - -cacctca
- - - - - - - - - - - - - - - -tgtttag
- - - - - - - - - - - - - - - - - - - ctcctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacat