1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttgagatttgcatcttaattttgcttgcggtgcttttagttttctgtaagttttgctcttttggatatcgacgattgaattcaattgaatcaatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGACTGGACAGGTCATGGACTGGCATTATCAGTGCGTTCGTGTAGAACATGG
species | Arabidopsis thaliana |
transcript | AT1G17210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGATCGCCTTCTCCTCCTCAAACTGCTGCTGTCTAG CTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAAEST: gi|116473267|gb|EG515859.1|EG515859
genomic: TAGATCGCCTTCTCCTCCTCAAACTGCTGCTG-CTAGgttcgtcccc ... caatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAA
EST: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAG CTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGAEST: gi|116407172|gb|EG449764.1|EG449764
genomic: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAGgttcgtcccc ... caatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGA
EST: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAG CTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGAEST: gi|19876749|gb|AU237580.1|AU237580
genomic: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAGgttcgtcccc ... caatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGA
EST: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAG CTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGA
genomic: TTCCGACGACGTGCTAGATCGCCTTCTCCTCCTCAAACTGCTGCTGCTAGgttcgtcccc ... caatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGA
gtaagttttgctcttttggatatcgacgattgaattcaattgaatcaatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGACTGGACAGGTCATGGACTGGCATTATCAGTGCGTTCGTGTAGAACATGG
aattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagatttgcatcttaattttgcttgcggtgcttttagttttctgtaagttttgctcttttggatatcgacgattgaattcaattgaatcaatgtgcagCTCTGCAGGGGCATCATCTCCAGCTGTTCTGGTAAACGCTGGCAGTGTTGACTGGACAGGTCATGGACTGGCATTATCAGTGCGTTCGTGTAGAACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattcaa