1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gctgcttttcttaccgtctccatccgaaattagttttttttgtttgtttgatgatttgtgttttgatgatttgtgtttgcgttttggttgatactagcagCTGAATATTGAATCCAACCTTTAATCTGAGAGGAGAAAGAAGATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCC
species | Arabidopsis thaliana |
transcript | AT1G16180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAG CTGAATATTGAATCCAACCTTTAATCTGAGAGGAGEST: gi|124961501|gb|EL036024.1|EL036024
genomic: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAGgtattttgat ... atactagcagCTGAATATTGAATCCAACCTTTAATCTGAGAGGAG
EST: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAG CTGAATATTGAATCCAACCTTTAATEST: gi|125269032|gb|EL283117.1|EL283117
genomic: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAGgtattttgat ... atactagcagCTGAATATTGAATCCAACCTTTAAT
EST: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAG CTGAATATTGAATCCAACCTTTAATCTGAGAGGAGAAAGAAGEST: gi|125162346|gb|EL189116.1|EL189116
genomic: AAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAGgtattttgat ... atactagcagCTGAATATTGAATCCAACCTTTAATCTGAGAGGAGAAAGAAG
EST: GTTTTACTTTTCAAGGAGAGGATAACTCAAGGTTTTTGATCGATCGCAAG CTGAATATTGAATCCAA
genomic: GTTTTACTTTTCAAGGAGAGGATAGCTCAAGGTTTTTGATCGATCGCAAGgtattttgat ... atactagcagCTGAATATTGAATCCAA
gtttgatgatttgtgttttgatgatttgtgtttgcgttttggttgatactagcagCTGAATATTGAATCCAACCTTTAATCTGAGAGGAGAAAGAAGATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCC
atgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcttttcttaccgtctccatccgaaattagttttttttgtttgtttgatgatttgtgttttgatgatttgtgtttgcgttttggttgatactagcagCTGAATATTGAATCCAACCTTTAATCTGAGAGGAGAAAGAAGATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-ctgcttt
- - - - - - - cgtctcc
- - - - - - - - - - - -ccgaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttttgg