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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaactttctttcataacctggttgctagtggatatttttcagttaattttagcctttttgttttgatgttgatattcagATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCAGAGAAATGCTCG

Basic information

species Arabidopsis thaliana
transcript AT1G16040.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878887|gb|AU239718.1|AU239718
EST:     ACTCTGTCGATCTCATTTCTGATCCAACTCTCACTCTGCGTCTCCTATGG                         ATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAAC
genomic: ACTCTGTCGATCTCATTTCTGATCCAACTCTCACTCTGCGTCTCCTATGGgtactaaaac ... tgatattcagATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagtggatatttttcagttaattttagcctttttgttttgatgttgatattcagATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCAGAGAAATGCTCG
                                          tgttgat  putative branch site (score: 4)
       atatttttcagttaat  TA-rich tract