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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttctaggcctggtcaatcaaaaatgtttagtgatggtgatgtgaattaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG

Basic information

species Arabidopsis thaliana
transcript AT1G15140.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124721890|gb|EH813292.1|EH813292
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGG
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGG
EST: gi|86017447|gb|DR313193.1|DR313193
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|124821087|gb|EH905953.1|EH905953
EST:     TCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: TCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|116475121|gb|EG517713.1|EG517713
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|86017445|gb|DR313191.1|DR313191
EST:     TGAGGAATATCCCACCGGTTTTGATTTTCGCCACTGGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: TGAGGAATATCCCACCG-TTTTGATTTTCGCCACTGG-ATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: gi|116475122|gb|EG517714.1|EG517714
EST:     CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG                         CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG
                                        ttcttatctct  CT-rich tract
 ttcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttctaggcctggtcaatcaaaaatgtttagtgatggtgatgtgaattaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG