1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttctaggcctggtcaatcaaaaatgtttagtgatggtgatgtgaattaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG
species | Arabidopsis thaliana |
transcript | AT1G15140.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGEST: gi|86017447|gb|DR313193.1|DR313193
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGG
EST: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGAEST: gi|124821087|gb|EH905953.1|EH905953
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: TCGCCACTGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGAEST: gi|116475121|gb|EG517713.1|EG517713
genomic: TCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGAEST: gi|86017445|gb|DR313191.1|DR313191
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: TGAGGAATATCCCACCGGTTTTGATTTTCGCCACTGGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGAEST: gi|116475122|gb|EG517714.1|EG517714
genomic: TGAGGAATATCCCACCG-TTTTGATTTTCGCCACTGG-ATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
EST: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAG CCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
genomic: CCTGAGGAATATCCCACCGTTTTGATTTTCGCCACTGGATCTGGAATTAGgtgagagctt ... atctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGA
attaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG
ttcttatctct CT-rich tract
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctaggcctggtcaatcaaaaatgtttagtgatggtgatgtgaattaagtaactgtcttcaatttggaatgtaatctcacatgttcttatctctgcagCCCCATCCGCTCACTAATCGAATCAGGATTTGGCGCTGATAGAAGATCTGACGTAAGACTCTATTACGGGGCTAGGAACCTGAATAGGATGGCTTACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG