1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaacgccaaaatcctctttttattcatgggatcttttataccaaattcgatttcttcattttgagatctgtgaatatcatcgtcccacgaaccaatcgaatctgttgttgtctgacattaattttcatttctatctcttgcagTCTTCAGCTTCCAATTGACTTTCAACAT
species | Arabidopsis thaliana |
transcript | AT1G15120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTCTCAATCTCAG TCTTCAGCTTCCAATTGACTTTCAACATEST: gi|164185715|gb|EL988603.1|EL988603
genomic: CTCTCTCAATCTCAGgtaacgccaa ... tctcttgcagTCTTCAGCTTCCAATTGACTTTCAACAT
EST: GCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAG TCTTCAGCTTCCAATTGACTTTCAEST: gi|163973158|gb|ES011372.1|ES011372
genomic: GCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAGgtaacgccaa ... tctcttgcagTCTTCAGCTTCCAATTGACTTTCA
EST: GGTTCTTCTTCCTTGCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAG TCTTCAGCTTCCAATTGACTTTCAACATGGCAGATG
genomic: GGTTCTTCTTCCTTGCTTCTTCGAGTCTCGATCTCCTCTCTCAATCTCAGgtaacgccaa ... tctcttgcagTCTTCAGCTTCCAATTGACTTTCAACATGGCAGATG
gaaccaatcgaatctgttgttgtctgacattaattttcatttctatctcttgcagTCTTCAGCTTCCAATTGACTTTCAACAT
cattaat putative branch site (score: 3)
ttttcatttctatctc CT-rich tract
attaattttcatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgccaaaatcctctttttattcatgggatcttttataccaaattcgatttcttcattttgagatctgtgaatatcatcgtcccacgaaccaatcgaatctgttgttgtctgacattaattttcatttctatctcttgcagTCTTCAGCTTCCAATTGACTTTCAACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT