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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttcatctatatctttttccactaatcaccattctaagagttgactttgtgtgagtttaaaatttgcagGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACGCTCTGATGTTC

Basic information

species Arabidopsis thaliana
transcript AT1G14860.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877467|gb|AU238298.1|AU238298
EST:     ACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGTCAAGTCGTCGG                         GTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGA
genomic: ACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGTCAAGTCGTCGGgtatgtttca ... aaatttgcagGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGA
EST: gi|116480305|gb|EG522897.1|EG522897
EST:     ACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGTCAAGTCGTCGG                         GTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGA
genomic: ACGGGTCGTCAATCCCAAAGATACAACAAGGGACGGCGTCAAGTCGTCGGgtatgtttca ... aaatttgcagGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccactaatcaccattctaagagttgactttgtgtgagtttaaaatttgcagGTGTATTCCATACAGACTCAAGATTTCGAGTGATGGCACAATTAGCGACGAATTTGAGGTTCTTGTTATTTCATCACAAAAGGGTCACGCTCTGATGTTC
                                     tgagtttaaaattt  TA-rich tract