1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcttaatttcctgagaaaaaaacccccaaaagattttggctttcttcttcctgttttgggtttattcatgttcttttgttgtgtgttttgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
species | Arabidopsis thaliana |
transcript | AT1G14510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|86050929|gb|DR346684.1|DR346684
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|86050926|gb|DR346681.1|DR346681
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|86050928|gb|DR346683.1|DR346683
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|125201374|gb|EL216328.1|EL216328
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|86050924|gb|DR346679.1|DR346679
genomic: TCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTGEST: gi|86050933|gb|DR346688.1|DR346688
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
EST: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTG ATGTACAGAAGTTTTACCATCAGTGTGACCCTG
genomic: TAGCGACTTTCGTGGTCGTAGAGCTGGTCTCATCAAGGCTCTCTCTACTGgtcagctcga ... tgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
cttcttcctgttttgggtttattcatgttcttttgttgtgtgttttgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
ttttgtttt CT-rich tract
tttattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttaatttcctgagaaaaaaacccccaaaagattttggctttcttcttcctgttttgggtttattcatgttcttttgttgtgtgttttgttttgcagATGTACAGAAGTTTTACCATCAGTGTGACCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - aaaaaac
- - - - - - - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - -gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttat