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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttttggtttcatctgtttctgagctatggggatgcattgataattttagattctagggtttttgttaccgatgagtctgattgaatgaagaaacaaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAGGTTTACAATCTCTATCAAAGTATTCCGAGATTCTTCTTCCATCATTGT

Basic information

species Arabidopsis thaliana
transcript AT1G14300.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125111359|gb|EL162870.1|EL162870
EST:     CTGGAAGAGCTTGTCGAATTTTTTGTCATCTCCTTCACCGCCT                         GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: CTGGAAGAGCTTGTCGAA-TTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: gi|125090837|gb|EL148670.1|EL148670
EST:     CTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT                         GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: CTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: gi|86074197|gb|DR369954.1|DR369954
EST:     TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT                         GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: gi|47828406|gb|CK118090.1|CK118090
EST:     TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT                         GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
EST: gi|19877399|gb|AU238230.1|AU238230
EST:     TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCT                         GTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA
genomic: TGACGGAGCTGGAAGAGCTTGTCGAATTTTTGTCATCTCCTTCACCGCCTgtaagctttt ... aaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctagggtttttgttaccgatgagtctgattgaatgaagaaacaaacttgtagGTGAAGAAAGCTGCGGTGGAAATTGTTAGTGGTTTAACTGGTTCCGAGGAAGGTTTACAATCTCTATCAAAGTATTCCGAGATTCTTCTTCCATCATTGT
                         gtctgat  putative branch site (score: 4)
         tttttgtta  TA-rich tract