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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtgttttctctctttttccctttagaatctgtcctccggattagggtttggctgaattgtactttgtctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG

Basic information

species Arabidopsis thaliana
transcript AT1G13770.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 2
---------gcaagtgttttctctctttttccctttagaatctgtcctccggattagggtt--tggctgaatt----gtactttgtcta-----gtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG
           |  | | |       ||||||    |  || |     ||  |  |   ||  |   | ||        |  ||||| |      ||||||| |||||| |||||||||||||||||||||     ||||| ||||||||  |||| |||
tatatatatatatatatatatatatattttccaaaaaagatgtacatgccaaaacatttttgatcattaaacccaacacatgttgtccatgtaaatgcagGGTTTTCCTAGCAGTGTAACTCCAGATTATGCTCCTTTTCAATTATGGGATTCATTGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatctgtcctccggattagggtttggctgaattgtactttgtctagtgcagGGCTTTCCTGGCAGTGTAACTCCAGATTATGTAGGGTTTCAGTTATGGGACACATTACAG
                                        ctttgtct  CT-rich tract
                                 aattgta  TA-rich tract