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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcaatgataggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT

Basic information

species Arabidopsis thaliana
transcript AT1G13180.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G13810.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------------------------------------gtacgttcaatgata-ggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT
                                                                                                       ||    | | |  || |  | || |||| | |    ||||      |||   | | ||| | || ||    || |||| | | |     || |||||||||||| ||||| ||||| |||||||| ||||||||||||||  | || ||||| |||||| | |||||||| ||| | |||||||| | ||  || 
gtacccttttcccccatttctatcacctaatttcccttcaacaaataccttttttttctccccctatgcggacaccatatgtttgttgaaatgccccaatgtggttttcttagttttatgactagaattgtctgtaatattaattgacccga---attcctgaatttggaaatctttttgttttttt-----tttcagGTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCCACAGTGGTTGCAATTAACGAGTCTTTTCTTAATCAATCGAGGAACTCC

upper sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA05G30630.1 (Glycine max), 3'ss of exon 1
--------------------------------------------------------------------------------------gtacgttcaa------tgataggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtg----tgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT
                                                                                      ||  ||| ||        ||    ||   ||  || |  |  ||   |  ||  | | || |   |     |||| |   | ||   |||    | | |||||| |||||||| ||||| ||||| |||||||| |||||||||||||   | || ||||| |||||| | |||||||| ||| | |||||||| | || ||| 
gtaccactttcctccatttctatcacccaattccctttctatgcattatgctattttttttctctgtcaatatgtggacaccatgtgtttgttgaaatgccccaatgcagttttcttagttttaggactagaattgtctgtaatattcattacccgaattcctgaatttggaagtgatgtttttttgcagTTATACTAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTAATGTTCCGACAGTGGTTGCAATTAACGAGTCCTTTCTTAATCAATCGAGGAATTCC

upper sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G13780.1 (Glycine max), 3'ss of exon 1
------gtacgttcaatgatag-gtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT
      ||  | | | |  |     | || |||| | |    || |    | | |        |    | |  || |    ||  | | | | | |||||||||||| || ||||| ||||| |||||||| ||||| ||||||||    || ||||| ||||| || || ||||||||| |||||||||| | | | |||
actcatgtttgcttagttttgttactagaattgtctgtaatattgattcatcccaattgggtttagtctgaatttgaaaaatg-attttttttttttgcagGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCGTGTTTTATTGCTCCGACAGTTGTTGCTGTTAATGAGTCGTTTCTGAATCAATCGAGGGGCTCT

upper sequence: AT1G13180.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0137g00280.t01 (Vitis vinifera), 3'ss of exon 1
gtacgttcaatgataggtttgatttgtttatgcgcttaacgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgt-attgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT
             ||  ||  | || |  ||||    ||| || |||||||||||| |  |||   ||    ||  | | | |   | |||||||||||||||||||||| ||||| ||||| || ||||| || || ||    || ||||| ||||| || ||||||||||| |||||||||     ||| || 
------------gtaatttcaaatt-tgcatgc---caac-tggtcgatgaaatgccg-gattgatttttccctaatttttatccattattgcagGTATACTAAAATGGGTTTTGCCGGTAACGTGGAGCCGTGCTTCATTGCCCCGACAGTTGTTGCTGTCAACGAGTCGTTCTTGAATCAAAATCGGAGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgttcgatgaaatgctgcaattagattcattcttgtgtgtgtgtgtattgcagGTATACTAAAATGGGATTTGCGGGTAATGTAGAGCCATGTTTTATCTTACCAACAGTAGTTGCAGTAAACGAGTCGTTTTTGAATCAATCCAAGAGTTCT
                    aattagatt  TA-rich tract