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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctgatttttgctcgatttggtcttattgcaaaatttagcacagatcttatactatctcttgctactttcgtgtctacgattctaattacgatctaattccgtgagttttggtttcaatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G12840.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124833474|gb|EH917913.1|EH917913
EST:     CCTTTGATACTCCAGTTTATCGG                         TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
genomic: CCTTTGATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: gi|222358097|gb|GH718178.1|GH718178
EST:     GATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGG                         TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
genomic: GATTACAAGAGCAGATCTCTAAGCATTCCTTTGATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: gi|124963007|gb|EL037371.1|EL037371
EST:     GATACTCCAGTTTATCGG                         TTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
genomic: GATACTCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTC
EST: gi|124891955|gb|EH970857.1|EH970857
EST:     TCCAGTTTATCGG                         TTTAACATTCCTAATCTTCGTGTTTGGAACCTTAGATTCTCTACTCGCTCT
genomic: TCCAGTTTATCGGgtactctgat ... aatttcgcagTTTAACATTCCTAATCTTCGTG-TTGGAACCTTAGATTCTCTACTCGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctacgattctaattacgatctaattccgtgagttttggtttcaatttcgcagTTTAACATTCCTAATCTTCGTGTTGGAACCTTAGATTCTCTACTCGCTCTCGGCGATGATCTGCTTAAG
        attctaatta  TA-rich tract