1 5' 3' | 2 5' 3' | 3 5' 3' |
...attgtgctagctgctacatctgattggaattcacaaccattgttagttttttgggaatcgtgatgatcagtgtgtacttaacttgtttcattttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTCTGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCC
species | Arabidopsis thaliana |
transcript | AT1G11200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCEST: gi|86050921|gb|DR346676.1|DR346676
genomic: CGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
EST: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCEST: gi|86050920|gb|DR346675.1|DR346675
genomic: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
EST: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCEST: gi|125233546|gb|EL247631.1|EL247631
genomic: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
EST: TGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCEST: gi|86050919|gb|DR346674.1|DR346674
genomic: TGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
EST: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCEST: gi|125034724|gb|EL106993.1|EL106993
genomic: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
EST: TCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCAEST: gi|86050922|gb|DR346677.1|DR346677
genomic: TCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCA
EST: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAG AATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
genomic: TCTCTACCTGAATCGTCTTCTTCGATAATCTCCCTCTTGTTTCAATCAAGgtttgccttc ... ttttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATC
gttttttgggaatcgtgatgatcagtgtgtacttaacttgtttcattttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTCTGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCC
acttaac putative branch site (score: 3)
tttcatttt putative PPT
ttgtttcattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtgctagctgctacatctgattggaattcacaaccattgttagttttttgggaatcgtgatgatcagtgtgtacttaacttgtttcattttatgcagAATGATTGACTTATCTACTTTATCTCCTGCGGAGATCACGGTGATGGGATCCGTGTTCTGTGTTTTGCTCTCGATGCACTTCACTATGCAGCTTGTATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - -ctacatc
- - - - - - - - - - - - - - - - acaacca
- - - - - - - - - - - - - - - - - - - - - - - -tttttgg