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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactttgagatttttctttgaatctcagttctctgtgatttggtacgttcaattacggatatctaatttgagttaatcgttgttgtgtttgtgcttcttagTCAGAAAGGTTATTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACTTGTGGGACTCTCGCTGCCTTTCTT

Basic information

species Arabidopsis thaliana
transcript AT1G10600.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164186145|gb|ES123931.1|ES123931
EST:     CGTCGGAAGCCAAAATACTGAGAGATGTTCATATC                         TCAGAAAGGTTATTGGAGGATTTCACTGAGCTTGACAAGAGAGAACACTGA
genomic: CGTCGGAAGCCAAAATACTGAGAGATGTTCATATCgtaagaactt ... tgcttcttagTCAGAAAGGTTATTGGAGGATTTCACTGAGCTTG-CAAGAGAGAACACTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcaattacggatatctaatttgagttaatcgttgttgtgtttgtgcttcttagTCAGAAAGGTTATTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACTTGTGGGACTCTCGCTGCCTTTCTT
                                             tgcttctt  CT-rich tract
                 taatttgagttaat  TA-rich tract