1 5' 3' | 2 5' 3' | 3 5' 3' |
...atagaaagtgtaggcagtaatgctaggagttttggagtattcgaaggttttcttatgtttttgaattacaactgagtttaattttgtgatgttaatgtagACTGAATGGACCAGAGAAGAAGATGAGAAGCTTCTACATCTTGCTAAACTTCTGCCTACTCAATGGAGAACTATTGCTCCTATTGTGGGTCGTACACCAT
species | Arabidopsis thaliana |
transcript | AT1G09770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACAGTGTAAAGCTCGCTGGTACGAGTGGCTCGATCCATCTATCAAAAAG ACTGAATGGAACCAGAGAAGAAGATGAGAAGCTTCTACEST: gi|125093375|gb|EL150976.1|EL150976
genomic: AACAGTGTAAAGCTCGCTGGTACGAGTGGCTCGATCCATCTATCAAAAAGgtaagtcgtg ... gttaatgtagACTGAATGGA-CCAGAGAAGAAGATGAGAAGCTTCTAC
EST: CCATCTATCAAAAAG AEST: gi|125093375|gb|EL150976.1|EL150976
genomic: CCATCTATCAAAAAGgtaagtcgtg ... gttaatgtag-
EST: CCATCTATCAAAAAG AEST: gi|124998985|gb|EL071254.1|EL071254
genomic: CCATCTATCAAAAAGgtaagtcgtg ... gttaatgtag-
EST: CAGTGTAAAGCTCGCTGGTACGAGTGGCTCGATCCAATACTATCAAAAAG ACTGAATGGACCAGAGAEST: gi|125198869|gb|EL213823.1|EL213823
genomic: CAGTGTAAAGCTCGCTGGTACGAGTGGCTCGATCCA-T-CTATCAAAAAGgtaagtcgtg ... gttaatgtagACTGAATGGACCAGAGA
EST: CGCTGGTACGAGTGGCTCGATCCATCTATCAAAAAG ACTGAATGGACCAGAGAAGAAGATGAGAAGCTTACTACATCTTGCTAAACT
genomic: CGCTGGTACGAGTGGCTCGATCCATCTATCAAAAAGgtaagtcgtg ... gttaatgtagACTGAATGGACCAGAGAAGAAGATGAGAAGCTT-CTACATCTTGCTAAACT
ggttttcttatgtttttgaattacaactgagtttaattttgtgatgttaatgtagACTGAATGGACCAGAGAAGAAGATGAGAAGCTTCTACATCTTGCTAAACTTCTGCCTACTCAATGGAGAACTATTGCTCCTATTGTGGGTCGTACACCAT
tgttaat putative branch site (score: 3)
ttatgtttttgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagaaagtgtaggcagtaatgctaggagttttggagtattcgaaggttttcttatgtttttgaattacaactgagtttaattttgtgatgttaatgtagACTGAATGGACCAGAGAAGAAGATGAGAAGCTTCTACATCTTGCTAAACTTCTGCCTACTCAATGGAGAACTATTGCTCCTATTGTGGGTCGTACACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
atagaaag
- - - - - - - - - - - - - - gttttgg