1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagatccatcgatcgaacaatctttttttctccagttagctcatattcatatttatgatcatgtcaattgcgagctcactgcttgattttttttccttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCTTTG
species | Arabidopsis thaliana |
transcript | AT1G09640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCANAATATCTG ATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGEST: gi|86057552|gb|DR353309.1|DR353309
genomic: CTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTGgtaagatcca ... ttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATG
EST: TGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTG ATCCGATATCAGAAGCCCCARGTTCGCTTGAATTCCGTCTGAGCAATGGCTEST: gi|86057549|gb|DR353306.1|DR353306
genomic: TGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTGgtaagatcca ... ttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCT
EST: TTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCANAATATCTG ATCCGATATCAGAAGCCCCAAGTTCGEST: gi|124860665|gb|EH945102.1|EH945102
genomic: TTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTGgtaagatcca ... ttggaaccagATCCGATATCAGAAGCCCCAAGTTCG
EST: CTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTG ATCCGATATCAGAAGEST: gi|47829190|gb|CK118874.1|CK118874
genomic: CTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTGgtaagatcca ... ttggaaccagATCCGATATCAGAAG
EST: TGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTG ATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCT
genomic: TGCTTCTTCTCTCTCGATTTGCTCTCACGGAAGATTCTTCAGAATATCTGgtaagatcca ... ttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCT
tttatgatcatgtcaattgcgagctcactgcttgattttttttccttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCTTTG
cttgattttttttcct CT-rich tract
ttgatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatccatcgatcgaacaatctttttttctccagttagctcatattcatatttatgatcatgtcaattgcgagctcactgcttgattttttttccttggaaccagATCCGATATCAGAAGCCCCAAGTTCGCTTGAATTCCGTCTGAGCAATGGCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC