1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaaaagttttctaatttaagcattacaaagtgtacaatttttgtttctggcaagtttttcttggcctaattcgtctattttatgaattcacctttttagGATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAAGCTAAGCTTGAATCTGCTCAAGAC
species | Arabidopsis thaliana |
transcript | AT1G09530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAATACTTTGAG GATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCTEST: gi|86068396|gb|DR364153.1|DR364153
genomic: TTTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAATACTTTGAGgttctcactc ... acctttttagGATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCT
EST: ATTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAATACTTTGAG GATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCT
genomic: TTTCTCCTCTGTTCTCTGCATTTGGATTGATGCCACTTTAATACTTTGAGgttctcactc ... acctttttagGATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCT
ttctggcaagtttttcttggcctaattcgtctattttatgaattcacctttttagGATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAAGCTAAGCTTGAATCTGCTCAAGAC
gcctaat putative branch site (score: 3)
ttcaccttttt putative PPT
tctattttatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaagttttctaatttaagcattacaaagtgtacaatttttgtttctggcaagtttttcttggcctaattcgtctattttatgaattcacctttttagGATCAAGACTTCGTAAAAGATTGTTTCTGTAAAACGCAACACCATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAAGCTAAGCTTGAATCTGCTCAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - -acaaagt