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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttcttcttttcttgattcaatctcggttcataccaaccgattttcaatatcttccgagtttcggtttgactctgaatttgaaggtgaatttactgaaccggcttaatttctcggttttgtagGTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAA

Basic information

species Arabidopsis thaliana
transcript AT1G08930.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125316494|gb|EL330579.1|EL330579
EST:     TCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGTGGC                         GTTGGTTTTTCATCGGGTGCACAAGCAGG
genomic: TCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGTGGCgtgagtcttc ... ggttttgtagGTTGGTTTTTCATCGGGTGCACAAGCAGG
EST: gi|124823046|gb|EH907912.1|EH907912
EST:     AGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGTAGGC                         GTTGGTTTTTCATCGGGTGCACAAGCAGGGA
genomic: AGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGT-GGCgtgagtcttc ... ggttttgtagGTTGGTTTTTCATCGGGTGCACAAGCAGGGA
EST: gi|125094696|gb|EL152102.1|EL152102
EST:     TCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGTGGC                         GTTGGTTTTTCATCGGGTGCACAAGCAGGG
genomic: TCCTCAGCACCTTTGTTGCCGTATCAGGCTCCTTCTGTACCGGTTGTGGCgtgagtcttc ... ggttttgtagGTTGGTTTTTCATCGGGTGCACAAGCAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactctgaatttgaaggtgaatttactgaaccggcttaatttctcggttttgtagGTTGGTTTTTCATCGGGTGCACAAGCAGGGATTACCAAAGATTTATCTCTCTCCGTTGCAGAA
                                 gcttaat  putative branch site (score: 4)
                                       tttctcg  CT-rich tract
                                   ttaatttct  TA-rich tract