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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaatcatctcgaataggagtaatttattttgttagcatcttcttcaattgatgctaatggatggttgatgatgatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACG

Basic information

species Arabidopsis thaliana
transcript AT1G08780.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA20G36840.1 (Glycine max), 3'ss of exon 1
---gtaagaaaatcatctcgaataggagtaatttattttgttag--catcttcttcaattgat-gctaatggatggttgatgatgatgttgcag-
     || |||| | |    |||      |    | |||||||   |  |   ||||  |||  ||| ||   |  ||  | ||  | | |      |  |      | || || |||| ||| |||||||||||||||||||||||||| || |  ||| |  |  | || ||  |  | || || || || || |      
gtaacaaaaaaaccctaataaatcttgagatcacactttgttatttcgacggattcatgtgaaagctgatctctttttatttattttttggggatccgaaaagGGAGGAGGCTCGGAGACGGAAGTGACATGGGAGGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCA

upper sequence: AT1G08780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA10G30520.1 (Glycine max), 3'ss of exon 1
--gtaagaaaatcatctcgaataggagtaatttattttgttag--catcttcttcaattgat-gctaatggatggt----tgatgatgatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACG------
   |   |||| | |    | |      |    | |||||||   |  |   ||||  |||  ||| ||   |  |    |  |  |  |||     |  |    | | |||||||||| ||| || |||||||| |||||||||||||| || |  ||| |  |  | || ||  |  | || || || || || |      
gtattgaaaaaccctaataattcttgagatcgcactttgttatttcgacggattcatgtgaaagctgatctcttttctttttctttttttgtgatccgaaaagGGGGGAGGATCTGAGACGGAAGTAACATGGGAAGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTTCACGAGCTTGAGGATGAGATCA

upper sequence: AT1G08780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0081g00080.t01 (Vitis vinifera), 3'ss of exon 1
gtaagaaaatcatctcgaataggagtaatttattttgttagcatcttcttcaattgatgctaatggatggttgatgatgatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACG------
||| | ||| |    | || |    |||||| ||| |||   |   | |||  || ||  || || ||     || |  |  |      |||  |   | |||||||| |  ||||||||||||||||| |||||||||||||| |  ||| |  | || ||||||||| | || || ||||| || |      
gtatgtaaaaccctaccaa-aaccctaatttttttcgttcttactattttc--ttcataatactg-ataaggcattacaacat------ggaagAGTGGAGGATCTGAAACAGAGGTGACATGGGAGGATCAGCAGAACATTAACAAATTCGGAAGACTAAACAACAGATTTCACGAGCTCGAAGATGAGATCA

upper sequence: AT1G08780.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S341_64V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------------------------------------------------------------------------------gtaagaaaatcatctcgaataggagtaatttattttgttagcatcttcttcaattgatgctaatggatggttgatg-atgatgttgca----gGGGAGTAAGAG--TGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACG------
                                                                                                     |     | |    |    | |  ||  ||    | |||    | |  ||   | | | |   | |||| |||||  | | | ||| |    |     || | |  ||||   |||| ||| ||||||||||| ||||||||||| ||||||  |||| | |||||||| ||||   | ||||| || || ||||      
gtaagttgcgccttgtttaggtgttttaattccccattctgttttgaatttgtaggtcgccttgttcacttttttgttttaggatttccgtgcttttattctttacgatttggattctgttgcggttgttgcgatcgttgtggtgtagtttg-tcgtttcgggtagatgattgatccagggtattggattatgactgatagGGGGATGGAGTAGAGACGGAAGTGACATGGGAAGACCAGCAGAATATTAATGCCTTCGGTCGTCTCAATAACAAGTTTCATGAACTTGAGGACGAGATTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86026581|gb|DR322334.1|DR322334
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         KGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026588|gb|DR322341.1|DR322341
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026595|gb|DR322348.1|DR322348
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026599|gb|DR322352.1|DR322352
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026594|gb|DR322347.1|DR322347
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026590|gb|DR322343.1|DR322343
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026577|gb|DR322330.1|DR322330
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026584|gb|DR322337.1|DR322337
EST:     TATTGAAADTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026597|gb|DR322350.1|DR322350
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGATGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026574|gb|DR322327.1|DR322327
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026585|gb|DR322338.1|DR322338
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026582|gb|DR322335.1|DR322335
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026583|gb|DR322336.1|DR322336
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGACGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026579|gb|DR322332.1|DR322332
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026576|gb|DR322329.1|DR322329
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026570|gb|DR322323.1|DR322323
EST:     TATTGAAATTTGGCCTAAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026600|gb|DR322353.1|DR322353
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026580|gb|DR322333.1|DR322333
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026596|gb|DR322349.1|DR322349
EST:     TATTGAAATTTGGCCTGAATCCCCAGAKTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAKAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026598|gb|DR322351.1|DR322351
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026587|gb|DR322340.1|DR322340
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026578|gb|DR322331.1|DR322331
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026589|gb|DR322342.1|DR322342
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026586|gb|DR322339.1|DR322339
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86077415|gb|DR373172.1|DR373172
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCWGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGACGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026575|gb|DR322328.1|DR322328
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026593|gb|DR322346.1|DR322346
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026571|gb|DR322324.1|DR322324
EST:     GAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: GAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026592|gb|DR322345.1|DR322345
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026572|gb|DR322325.1|DR322325
EST:     ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: ATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
EST: gi|86026601|gb|DR322354.1|DR322354
EST:     TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAA                         GGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC
genomic: TATTGAAATTTGGCCTGAATCCCCAGAGTGCGACGAAAATGCAGCAGCAAgtaagaaaat ... gatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttagcatcttcttcaattgatgctaatggatggttgatgatgatgttgcagGGGAGTAAGAGTGGATCTGAGATGGAGGTGACATGGGAGGACCAGCAGAACATTAATATCTTCAGCCGTCTCAACAACAGAGTCCATGACCTCGATGACG
               ttcaatt  TA-rich tract