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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgtatctcctttgtttagatagtgatttttttgtgctttcttttttccacttcaacaattgatattgttccatttttccatctttttgtaactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTGCTGGGGATGTC

Basic information

species Arabidopsis thaliana
transcript AT1G08110.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058486|gb|DR354243.1|DR354243
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058484|gb|DR354241.1|DR354241
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058487|gb|DR354244.1|DR354244
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86042017|gb|DR337772.1|DR337772
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058483|gb|DR354240.1|DR354240
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86042021|gb|DR337776.1|DR337776
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058480|gb|DR354237.1|DR354237
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058481|gb|DR354238.1|DR354238
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|125203116|gb|EL218070.1|EL218070
EST:     CAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: CAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058489|gb|DR354246.1|DR354246
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058490|gb|DR354247.1|DR354247
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|301501106|gb|HO206646.1|HO206646
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|152035076|gb|BP843687.2|BP843687
EST:     TGTAAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058479|gb|DR354236.1|DR354236
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058488|gb|DR354245.1|DR354245
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058485|gb|DR354242.1|DR354242
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|86058491|gb|DR354248.1|DR354248
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
EST: gi|116447688|gb|EG490280.1|EG490280
EST:     TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACT                         ATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG
genomic: TGTCAACGAATCGAGATGAGGCTACAAAAGGATACATCATGCAACAGACTgtaagattcc ... taactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccacttcaacaattgatattgttccatttttccatctttttgtaactctcagATGTTTCGGATCAAGGACCCTAAGGCTAGTCTTGACTTTTACTCACGTGTGCTGGGGATGTC
                                          ttgtaac  putative branch site (score: 2)
                        ttccatttttccatct  CT-rich tract
             aattgatatt  TA-rich tract