1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatattcatgatgagtaaatctgtgcatttgtatcaaatttttagtgctttgcagattttattttaacgcaagctcttgtttgttgtttgacttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCAT
species | Arabidopsis thaliana |
transcript | AT1G07770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAANAATCAGTGTTCTTAACGAEST: gi|152035691|gb|BP861287.2|BP861287
genomic: CCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGA
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTT-A- -AGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152038400|gb|AV821952.2|AV821952
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152038534|gb|AV827595.2|AV827595
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|116409593|gb|EG452185.1|EG452185
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152035040|gb|BP842816.2|BP842816
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|86075131|gb|DR370888.1|DR370888
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: CTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|301502833|gb|HO208373.1|HO208373
genomic: CTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152035637|gb|BP859475.2|BP859475
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATGGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152037866|gb|BP800725.2|BP800725
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGEST: gi|152034265|gb|BP823552.2|BP823552
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
EST: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAG TAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
genomic: TGCTTTTCTCCGTCACTGAGTACCTTGCCTCTCGAGCTCCCAATCTTAAGgtacaattga ... acttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATG
tgctttgcagattttattttaacgcaagctcttgtttgttgtttgacttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCAT
cttgttt CT-rich tract
agattttattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattcatgatgagtaaatctgtgcatttgtatcaaatttttagtgctttgcagattttattttaacgcaagctcttgtttgttgtttgacttgtttagTAGAGGATTGAGCTTAAGGCAAGATGGTAAGAATCAGTGTTCTTAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAACGAGGCAAGAGGCAGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - -tatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt