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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgccaccattaatctgaaaagtttcaatctttttgataatttgacaacaaaattgagtaggttttggttttggatatgcactcacagTTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTCAGTTGGCTGGCGTCTTGAGCTCCGACGGACGAGACCAGTGGGTCGGCCAAGACAC

Basic information

species Arabidopsis thaliana
transcript AT1G07010.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125050227|gb|EL122496.1|EL122496
EST:     TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAG                         TTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTC
genomic: TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAGgttcgccacc ... gcactcacagTTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTC
EST: gi|124850785|gb|EH935222.1|EH935222
EST:     TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAG                         TTGGAGAACCTTCATGGCGATCTGGGTAAAGCCAG
genomic: TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAGgttcgccacc ... gcactcacagTTGGAGA-CCTTCATGGCGATCTGGGTAAAGCCAG
EST: gi|116396058|gb|EG438650.1|EG438650
EST:     TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAG                         TTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTCAGTTGG
genomic: TGGAGATCCACCCACTTTCGTCTCTGCTCCTGCTCGTCGTATCGTTGCAGgttcgccacc ... gcactcacagTTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTCAGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgataatttgacaacaaaattgagtaggttttggttttggatatgcactcacagTTGGAGACCTTCATGGCGATCTGGGTAAAGCCAGAGACGCACTTCAGTTGGCTGGCGTCTTGAGCTCCGACGGACGAGACCAGTGGGTCGGCCAAGACAC
      atttgac  putative branch site (score: 4)
             aacaaaatt  TA-rich tract