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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacagGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTTATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATC

Basic information

species Arabidopsis thaliana
transcript AT1G06820.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G108457_T02 (Zea mays), 3'ss of exon 1
gtttgtttgttcatcatcttgtgattttcaggagaactgaacattagtagaagaagcactagt--ttgtttggtccttggctaaag----taataatggcttaatttgaagggaac-agGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTTATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATC
                     || |  |     ||   | | | ||||    |    |    |  || | |   |  |   || |     ||||  |      || ||  |  | | |||| ||| | || ||||| || || |||||| | |||||||| ||||||||||| ||| ||||||| ||| | || || ||||||||||| ||   | |||
-------------------gatggtacttgacggattaggatagtagtgttggtcttatcgcttcttatataaccactcattacaaactttaatcgttatgacatatgctgttatccagGGTAACTTGAATTTGATCACACAAGCATTGGAAGCAGTTGGGCGTAAGATGGAAGTTCTACCTGACCCTTCTACAGTTCATTTCCATCTACCTGGTGATC

upper sequence: AT1G06820.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 3'ss of exon 1
gtttgtttgttcatcatcttgtgattttcaggagaactgaac--attagtagaagaagcactagtttgtttggtccttg-gctaaagtaataatggcttaatttgaa--gggaacagGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTTATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATC
                |  | ||| ||| |  | |     ||  |||     |    ||| | |||   ||| |  | |   |||  |  | |    ||   || ||  | |  ||||| ||  |||| || ||||| || ||| || | ||||||||  |||||||| |||| ||||||||||| || ||||||||||||||| | |||| ||| |
----------------ttgtttgaattttacaaaattctgacttattttccaatttggcatt-gttgagttgttagtggtaataagttcttcacattttgtgttcaaatgtgggcagGGAAATTTAAATTTAATAACCCAAGCACTGGAAGCAGTTGGATGTAAGATGCAGGTGATACCTGATCCAACTACTGTCCATTTCCATTTACCCAGTAACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagtttgtttggtccttggctaaagtaataatggcttaatttgaagggaacagGGGAACCTAAACTTGATAACTCAGGCATTGAAGGCAGTTGGTCGTAAGATGGAGGTTATACCTGATCCTACCACTGTCCATTTCCATCTCCCCAATAATC
                      taaagtaataat  TA-rich tract