1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtcagttctcttaatttcgattctcaattttatacattttgtgaaacaaaagtattgaaatgaattaaaagttaatctctttttttttattctctgtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG
species | Arabidopsis thaliana |
transcript | AT1G06690.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTCTGGTCATGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG ACAGGAAATTGAAGGCTGCTAAAGGTGCTTTCGATACCAGTCTTGACAATGEST: gi|116456052|gb|EG498644.1|EG498644
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
EST: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGEST: gi|116456053|gb|EG498645.1|EG498645
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
EST: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATG ACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
genomic: AGTCTGGTCTTGGGGTGATAACAGCTATTGGAATGATTTCCAGTGGGATGgtcagttctc ... gtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACG
agtattgaaatgaattaaaagttaatctctttttttttattctctgtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG
agttaat putative branch site (score: 4)
tctctttttttttatt CT-rich tract
tgaaatgaattaaaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttctcttaatttcgattctcaattttatacattttgtgaaacaaaagtattgaaatgaattaaaagttaatctctttttttttattctctgtgatggtagACAGAAAATTGAAGGCGGCTAAAGGTGCTTTCGACACCAGTCTTGACAACGGTATTGATTTTTTCGATACCGCAGAAGTTTATGGTTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT