1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatggatgtgtttttttatacttgactctgcctcaaataggttggttcactgattcctttattttggtctaatggatctcttatttgtgttatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCTGAACAGGGCTTTTTTATGAGGCCAG
species | Arabidopsis thaliana |
transcript | AT1G06460.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGTCCCCTTG AACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATCEST: gi|47831960|gb|CK121644.1|CK121644
genomic: CTCGTCCCCTTGgtattcccct ... tatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATC
EST: TCCCGGCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTG AACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATCEST: gi|47830420|gb|CK120104.1|CK120104
genomic: TCCCGGCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTGgtattcccct ... tatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATC
EST: TCCCGGCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTG AACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATC
genomic: TCCCGGCAACCAGTTACGATTCCGCCTCCACCGCATCTCTCGTCCCCTTGgtattcccct ... tatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATC
ttcactgattcctttattttggtctaatggatctcttatttgtgttatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCTGAACAGGGCTTTTTTATGAGGCCAG
gtctaat putative branch site (score: 3)
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatggatgtgtttttttatacttgactctgcctcaaataggttggttcactgattcctttattttggtctaatggatctcttatttgtgttatgcctcagAACTGCAGCAGCAGTTTGAACACTGTCATCCAAAGGTGTGACAACAAAATCTCTTTTGCCCGGCAAGCATCATCTGAACAGGGCTTTTTTATGAGGCCAG
- - - - - - - - - - - - - - - cctcaaa