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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatttcactcttttcttcttttcacattttctagggttttgattgtttagcgccttagaatttgacctgaatttgagactaccttaaagtaaagatttttctcttaattcatcagAGAGCATATCAATTGTGGAGGGAGTCATTTAGAATGTATCCTTGGAATCTGGTTAAAAGAGTTAGACTTTGTTGGGACAACCTCAAACAATGGTTGACCT

Basic information

species Arabidopsis thaliana
transcript AT1G06110.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037711|gb|BP795876.2|BP795876
EST:     ATATCTCTACTCCTCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAG                         AGAGCATATCAATTGTGGAGGGAGTCATTTAGAATGTATCCTTGGAATCTG
genomic: ATATCTCTACTCCTCTCGATCCCCATGGAGATCCTGCTCCTTCCTTCAAGgtcaatttca ... aattcatcagAGAGCATATCAATTGTGGAGGGAGTCATTTAGAATGTATCCTTGGAATCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacctgaatttgagactaccttaaagtaaagatttttctcttaattcatcagAGAGCATATCAATTGTGGAGGGAGTCATTTAGAATGTATCCTTGGAATCTGGTTAAAAGAGTTAGACTTTGTTGGGACAACCTCAAACAATGGTTGACCT
                                         tcttaat  putative branch site (score: 3)
                                   tttttctcttaattc  CT-rich tract
                       ttaaagtaaagatttt  TA-rich tract