1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tactaatcttccttagtactgcagtgttatattaagttattggaatctggaaactgtgtataatgtgttattctctaaagacttttcttttgttaaccagGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAACTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTA
species | Arabidopsis thaliana |
transcript | AT1G06060.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCCGGCTTCGAGTGGAA-AATATGGATCCTCGTCAATTCGAACACACC GTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACEST: gi|19874597|gb|AU235428.1|AU235428
genomic: GCGCCGGCTTCGAGTGGAACAATATGGATCCTCGTCAATTCGAACACACCgtaagttttt ... tgttaaccagGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCAC
EST: GCGCCGGCTTCGAGTGGAACAATATGGATCCTCGTCAATTCGAACACACC GTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCAC
genomic: GCGCCGGCTTCGAGTGGAACAATATGGATCCTCGTCAATTCGAACACACCgtaagttttt ... tgttaaccagGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCAC
tctggaaactgtgtataatgtgttattctctaaagacttttcttttgttaaccagGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAACTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTA
ctctaaa putative branch site (score: 3)
cttttcttttgtt putative PPT
tataatgtgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactaatcttccttagtactgcagtgttatattaagttattggaatctggaaactgtgtataatgtgttattctctaaagacttttcttttgttaaccagGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAACTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTA
-actaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctaaa