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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctctacagatctcattagatcttgtcaaatattttatggattcgttagtttgaatctgctctgttgcaaagttgtgattttatagatcttgtagcaactgttgtatgtatgccttgttgtttaagactagggtttgctcattatgttcttatgacttgtagGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACC

Basic information

species Arabidopsis thaliana
transcript AT1G06040.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125183505|gb|EL198459.1|EL198459
EST:     TTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGC-ATATCTGCCAA                         GAGAAGGCAGCTTTCAT
genomic: TTCATCTTAATTCCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAgtaagtttct ... tgacttgtagGAGAAGGCAGCTTTCAT
EST: gi|164077997|gb|ES073648.1|ES073648
EST:     CCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAA                         GAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGG
genomic: CCCTCTCCACCAAATTCCCTCGTTGCGATATCTGCCAAgtaagtttct ... tgacttgtagGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgccttgttgtttaagactagggtttgctcattatgttcttatgacttgtagGAGAAGGCAGCTTTCATTTTCTGTGTAGAGGATAGAGCTCTGCTTTGCAGGGACTGCGATGAATCCATCCACGTGGCTAATTCTCGATCTGCTAATCACC
                                       ttcttat  CT-rich tract
          ttgtttaa  TA-rich tract