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gttagtgttgaaattgtaaaggatgtgttgtcgaattcactttgagctaatgaaattgaatgttgatgatgacctagtgaaagtaggaggatgatcttattttctttttttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGTCCTGGTGTTTGCAAGAGCTTCTTCAAGCTTCAGATGATCAGTCTTCTCT
species | Arabidopsis thaliana |
transcript | AT1G04200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGTEST: gi|86072706|gb|DR368463.1|DR368463
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTNNEST: gi|86070556|gb|DR366313.1|DR366313
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCG CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGTEST: gi|86070555|gb|DR366312.1|DR366312
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
EST: GAGTTCTCGCTGGCCTAGTGTTCGGGTTCAACAAGCCTGTGAACTTTTCG CACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
genomic: GAGTTCTCGCTGGCCTAGTGATCGGGTTCAACAAGCCTGTGAACTTTTCGgttagtgttg ... tttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGT
tgatgatgacctagtgaaagtaggaggatgatcttattttctttttttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGTCCTGGTGTTTGCAAGAGCTTCTTCAAGCTTCAGATGATCAGTCTTCTCT
tgttgat putative branch site (score: 4)
tcttattttctttttt putative PPT
atcttattttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgttgaaattgtaaaggatgtgttgtcgaattcactttgagctaatgaaattgaatgttgatgatgacctagtgaaagtaggaggatgatcttattttctttttttgtttcagCACAAAGTAATGGCTACACTAGGCACCTTGCAAAACTATTGATTCATCTGTCCTGGTGTTTGCAAGAGCTTCTTCAAGCTTCAGATGATCAGTCTTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG