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...ttgcagcctataatttcatgttttgcggtgcccagactaattctgtcagctgctgatctggctggatcactcataatatggtttgagtgtgattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACACAAAGTTTGTTCCAAGAAAACGGTGGGGTGAAAGCCGATGTGATGCTGAT
species | Arabidopsis thaliana |
transcript | AT1G04140.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAAAACCNGTGGCTAATGTCCATCGCCAGAG GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATT-CACCAAACACEST: gi|116443186|gb|EG485778.1|EG485778
genomic: GCAAAACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
EST: CGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAG GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACACEST: gi|86085412|gb|DR381171.1|DR381171
genomic: CGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
EST: AACCAGTGGCTAATGTCCATCGCCAGAG GTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
genomic: AACCAGTGGCTAATGTCCATCGCCAGAGgtcaggacta ... gattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACAC
tcagctgctgatctggctggatcactcataatatggtttgagtgtgattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACACAAAGTTTGTTCCAAGAAAACGGTGGGGTGAAAGCCGATGTGATGCTGAT
tgctgat putative branch site (score: 3)
tcataatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagcctataatttcatgttttgcggtgcccagactaattctgtcagctgctgatctggctggatcactcataatatggtttgagtgtgattattcagGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACACAAAGTTTGTTCCAAGAAAACGGTGGGGTGAAAGCCGATGTGATGCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - tgttttg
- - - - - - - - - - - - - - - -ccagact
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttga