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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagctctgtttcataatgactgaatactaatgtctgatctttctgtagtctttctccatttgatctcaatttattatgttgtagAATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATATCCCTTTGGATTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G03550.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86035258|gb|DR331011.1|DR331011
EST:     CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCG                         AATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA
genomic: CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGgtaaagagct ... tatgttgtagAATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA
EST: gi|86035257|gb|DR331010.1|DR331010
EST:     CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCG                         AATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA
genomic: CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGgtaaagagct ... tatgttgtagAATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA
EST: gi|86035256|gb|DR331009.1|DR331009
EST:     CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCG                         AATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA
genomic: CACGACACGATCCTAATCCATTTGCTGATGAAGAGATCAATCCTTTTGCGgtaaagagct ... tatgttgtagAATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtctgatctttctgtagtctttctccatttgatctcaatttattatgttgtagAATCATACAAGTGTTCCTCCTGCGAGCAACTCTTATCTCAAGCCACTTCCACCGGAACCTTATGATCGTGGTGCAACCGTTGATATCCCTTTGGATTCTG
                                      aatttattatgttgta  TA-rich tract