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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgggtcttaatcgaatcaatgaacgggaaacatatttgtgatatcagaattgtttaaagttttaaacttttgaagctgggttgtctcttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G02305.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038008|gb|DR333763.1|DR333763
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037983|gb|DR333738.1|DR333738
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037996|gb|DR333751.1|DR333751
EST:     CTGTCTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038014|gb|DR333769.1|DR333769
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037985|gb|DR333740.1|DR333740
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGTAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037980|gb|DR333735.1|DR333735
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038020|gb|DR333775.1|DR333775
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038002|gb|DR333757.1|DR333757
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037992|gb|DR333747.1|DR333747
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038004|gb|DR333759.1|DR333759
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|116429058|gb|EG471650.1|EG471650
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038015|gb|DR333770.1|DR333770
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037994|gb|DR333749.1|DR333749
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGTAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037990|gb|DR333745.1|DR333745
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038001|gb|DR333756.1|DR333756
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038019|gb|DR333774.1|DR333774
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037989|gb|DR333744.1|DR333744
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037997|gb|DR333752.1|DR333752
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037987|gb|DR333742.1|DR333742
EST:     CTGTCTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037986|gb|DR333741.1|DR333741
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037984|gb|DR333739.1|DR333739
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037998|gb|DR333753.1|DR333753
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|164173748|gb|ES133563.1|ES133563
EST:     ATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: ATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|125092259|gb|EL150082.1|EL150082
EST:     CTTCTAATTTCACCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038000|gb|DR333755.1|DR333755
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTAYYGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038013|gb|DR333768.1|DR333768
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|164042028|gb|ES155278.1|ES155278
EST:     TTCATCC-TCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: TTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038011|gb|DR333766.1|DR333766
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATSTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037991|gb|DR333746.1|DR333746
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038017|gb|DR333772.1|DR333772
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038021|gb|DR333776.1|DR333776
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86037988|gb|DR333743.1|DR333743
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         TGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
EST: gi|86038010|gb|DR333765.1|DR333765
EST:     CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAG                         GGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT
genomic: CTGTTTTCTTCTGTTTAGGGCTTCTAATTTCATCCTTCAACTTGTTGCAGgtacttgaac ... ttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagaattgtttaaagttttaaacttttgaagctgggttgtctcttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG
                                           tcttaat  putative branch site (score: 3)
                                      ttgtctctt  CT-rich tract
     aattgtttaaagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctgggtcttaatcgaatcaatgaacgggaaacatatttgtgatatcagaattgtttaaagttttaaacttttgaagctgggttgtctcttaatctcagGGTATTGCAGCTGAAAATCTTTCCAAGCAGAAACTGACCTCATGGATTCTTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -gaatcaa
- - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - -atcagaa