1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gttagatccggattaagtgttgtttttcagtcctgatctgctgctctatatcatggcattttgtgtttcgatctaatttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG
species | Arabidopsis thaliana |
transcript | AT1G01920.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAG GTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAEST: gi|86069207|gb|DR364964.1|DR364964
genomic: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAGgttagatccg ... tttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTA
EST: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAG GTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAEST: gi|19874501|gb|AU235332.1|AU235332
genomic: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAGgttagatccg ... tttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTA
EST: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAG GTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAEST: gi|86069206|gb|DR364963.1|DR364963
genomic: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAGgttagatccg ... tttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTA
EST: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAG GTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTA
genomic: CGATTTCAGAAGAAGAAGCCAAACTCGAAAGGTTCCTAGATTGGCTTCAGgttagatccg ... tttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTA
cctgatctgctgctctatatcatggcattttgtgtttcgatctaatttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG
atctaat putative branch site (score: 3)
tttcattc CT-rich tract
taatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagatccggattaagtgttgtttttcagtcctgatctgctgctctatatcatggcattttgtgtttcgatctaatttcattcagGTGAATGGAGGTGAATTAAGAGGCTGCAACATCAAATATTCTGACTCCCTAAAAGGATTTGGCATATTCGCTTCCACCTCCACTCAAGCTTCCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT