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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatactagctctctttctctttaatctttgccggattctaaatctgagattgttctctgctgactcaaattcaattttacagGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAACCGGTCCGCTGGTTCTGGTTA

Basic information

species Arabidopsis thaliana
transcript AT1G01720.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502474|gb|HO208014.1|HO208014
EST:     GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTG                         GTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA
genomic: GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGgtgacatact ... aattttacagGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA
EST: gi|301501314|gb|HO206854.1|HO206854
EST:     GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTG                         GTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA
genomic: GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGgtgacatact ... aattttacagGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA
EST: gi|116443557|gb|EG486149.1|EG486149
EST:     GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTG                         GTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA
genomic: GATCATCGCTGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGgtgacatact ... aattttacagGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgccggattctaaatctgagattgttctctgctgactcaaattcaattttacagGTTTAGCCTTGTATGGTGAGAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAACCGGTCCGCTGGTTCTGGTTA
                              tgctgac  putative branch site (score: 2)
                                     tcaaattcaatttta  TA-rich tract