1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaatactcttgattcgattgattctctctctgccaattagggttatgatgttagattcagtcaatatcaatgagtgatgaaacgttctgattttgacagATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTC
species | Arabidopsis thaliana |
transcript | AT1G01050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAG ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTEST: gi|47828474|gb|CK118158.1|CK118158
genomic: ATCCTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAGgtacgttttt ... attttgacagATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGT
EST: CTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAG ATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGT
genomic: CTTGCGATAAAGAAAACAACAATCGGCTGTTTCGTTTCGATCCAAAGgtacgttttt ... attttgacagATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGT
atgatgttagattcagtcaatatcaatgagtgatgaaacgttctgattttgacagATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTC
ttctgat putative branch site (score: 3)
aatatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatactcttgattcgattgattctctctctgccaattagggttatgatgttagattcagtcaatatcaatgagtgatgaaacgttctgattttgacagATGAGTGAAGAAACTAAAGATAACCAGAGGCTGCAGCGACCAGCTCCTCGTCTTAACGAGAGGATTCTCTCATCCTTGTCAAGAAGATCCGTAGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - -tctctct
- - - - - - - - - - - - - - - ctgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaac