Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	TC88374	no hits with E-value < 1e-10	1	14.551	1 - 21	108 - 128	Cleavage	CCTCCACCTGTCTTACGGTTT :::::: :::::::::::::: GGAGGTTGACAGAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	TC67509	no hits with E-value < 1e-10	1	14.564	1 - 21	1227 - 1247	Cleavage	CCTCCACCTGTCTTACGGTTT :::::: :::::::::::::: GGAGGTTGACAGAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	TC86151	no hits with E-value < 1e-10	3	22.661	1 - 21	275 - 295	Translation	CCTCCACCTGTCTTACGGTTT ::::: ::::. ::::::::. GGAGGAGGACGCAATGCCAAG
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000315790	no hits with E-value < 1e-10	3	16.711	1 - 21	149 - 169	Translation	CCTCCACCTGTCTTACGGTTT :::::::.: :::::::.:: AGAGGTGGGCCGAATGCCGAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000278177	no hits with E-value < 1e-10	3	17.978	1 - 21	738 - 758	Cleavage	CCTCCACCTGTCTTACGGTTT : ::::::.:.:::::::..: GAAGGTGGGCGGAATGCCGGA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000619285	F-box/kelch-repeat protein At5g43190 E-value: 4e-74 more	3	15.05	1 - 21	912 - 932	Cleavage	CCTCCACCTGTCTTACGGTTT ::::::::: ::: ::::..: GGAGGTGGAGAGATTGCCGGA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000275896	Calcium-binding mitochondrial carrier protein SCaMC-1 E-value: 4e-79 more	3	15.11	1 - 21	303 - 323	Translation	CCTCCACCTGTCTTACGGTTT ::::: ::::. ::::::::. GGAGGAGGACGCAATGCCAAG
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000179659	Interferon-induced GTP-binding protein MxC E-value: 5e-50 more	3	19.981	1 - 21	1005 - 1025	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000246436	Polygalacturonase E-value: 5e-62 more	3	23.016	1 - 21	493 - 513	Translation	CCTCCACCTGTCTTACGGTTT ::::::: :: ::::::::: GGAGGTGCACTTAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000123004	Interferon-induced GTP-binding protein Mx1 E-value: 4e-13 more	3	18.212	1 - 21	915 - 935	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000226644	Interferon-induced GTP-binding protein Mx1 E-value: 5e-17 more	3	18.207	1 - 21	1011 - 1031	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000182956	Interferon-induced GTP-binding protein Mx1 E-value: 4e-18 more	3	18.212	1 - 21	1074 - 1094	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000466196	Interferon-induced GTP-binding protein MxC E-value: 5e-58 more	3	19.515	1 - 21	1302 - 1322	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA
mdm-MIR394a	None	TTTGGCATTCTGTCCACCTCC	KNOWN and CONSERVED	MDP0000176025	Interferon-induced GTP-binding protein Mx2 E-value: 7e-56 more	3	19.987	1 - 21	1494 - 1514	Translation	CCTCCACCTGTCTTACGGTTT :::: :: ::: ::::::::: GGAGCTGAACAAAATGCCAAA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 1 (14)
CONSERVED: 0 (0)
NOVEL: 0 (0)