name |
sequence |
fragment abundance |
weighted fragment abundance |
p-value |
cleavage position |
alignment score |
plot |
alignment |
transcript name |
duplex |
BLAST search |
most similar mature |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mdm-MIR172e | AGAATCTTGATGATGCTGCAT | 4 | 2 | 0 | 1300 | 2.5 | plot | alignment | MDP0000130802 | 5' AGAATCTTGATGATGCTGCAT 3'
|||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAT (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 4 | 2 | 0 | 1300 | 2 | plot | alignment | MDP0000130802 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o|||||||||||||o
3' CTACCCTTAGGACTACTACGACGTTATCTTTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 304 | 31.5152 | 0 | 658 | 2 | plot | alignment | MDP0000810351 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 2e-146) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR85N | TGGCACCAAAGTCACCACCCG | 49 | 7 | 0.02 | 1686 | 3 | plot | alignment | MDP0000007682 | 5' TGGCACCAAAGTCACCACCCG 3'
o|||||||||||||| ||| o
3' GAAAGCCGTGGTTTCAGTGATGGTTTGACAAC 5' |
UniProt best hit: sp|P43309|PPO_MALDO (E-value = 0.0) miRBase: no hits |
None | mdm-MIR160e | GCGTATGAGGAGCCATGCATA | 5 | 2.5 | 0.03 | 1750 | 3.5 | plot | alignment | MDP0000181200 | 5' GCGTATGAGGAGCCATGCATA 3'
||||||||||o |||||||
3' CGAAGGCATACTCCTTCGTACGTACGTTGTGT 5' |
UniProt: no hits miRBase: no hits |
GCGTATGAGGAGCCATGCATA (0 mismatches) |
mdm-MIR167c | TGAAGCTGCCAGCATGATCTA | 18 | 9 | 0.05 | 1928 | 3 | plot | alignment | MDP0000550049 | 5' TGAAGCTGCCAGCATGATCTA 3'
||||||||||| |||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTGCTA 5' |
UniProt best hit: sp|Q9FGV1|ARFH_ARATH (E-value = 1e-148) miRBase: no hits |
TGAAGCTGCCAGCATGATCTAA (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 655 | 2.5 | plot | alignment | MDP0000415930 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 7e-140) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 18 | 4.5 | 0.03 | 537 | 3 | plot | alignment | MDP0000130212 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||o||||o||||| |||||||
3' GTCGAGGAAGGGTAGGGTAGGTAAGGAGGGTG 5' |
UniProt best hit: sp|Q9SAG8|DNAJ8_ARATH (E-value = 1e-33) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 214 | 2 | plot | alignment | MDP0000275398 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGTACAGA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 9e-103) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR131N | CAAGCTTCCTCTTCATACTCGT | 27 | 27 | 0.03 | 412 | 4 | plot | alignment | gnl|UG|Mdo#S26340242 | 5' CAAGCTTCCTCTTCATACTCGT 3'
|||| ||||||o||||| | |o
3' AAGTGTTCCAAGGAGGAGTAT-ACCGTAATGT 5' |
UniProt best hit: sp|O81312|GAE3_ARATH (E-value = 1e-48) miRBase: no hits |
None | mdm-MIR85N | TGGCACCAAAGTCACCACCCG | 49 | 7 | 0 | 1714 | 2 | plot | alignment | gnl|UG|Mdo#S20677714 | 5' TGGCACCAAAGTCACCACCCG 3'
o|||||||||||||||||| o
3' GAAAGCCGTGGTTTCAGTGGTGGTTTGACGAC 5' |
UniProt best hit: sp|P43309|PPO_MALDO (E-value = 0.0) miRBase: no hits |
None | mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0.01 | 655 | 2.5 | plot | alignment | MDP0000464475 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-24) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 4 | 1.33333 | 0.02 | 421 | 3 | plot | alignment | MDP0000127345 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||| ||o|| ||||||||o||
3' CAACAGAACGGGTAAGGAGGGTAGGGATCTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 4e-71) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 50 | 7.14286 | 0.03 | 640 | 4 | plot | alignment | MDP0000193109 | 5' TCTTTCCTATCCCTCCCATTCC 3'
| || ||o|| ||||||||o||
3' CAACAAAACGGGTAAGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 8e-40) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR172e | AGAATCTTGATGATGCTGCAT | 7 | 2.33333 | 0 | 1267 | 1.5 | plot | alignment | MDP0000296716 | 5' AGAATCTTGATGATGCTGCAT 3'
||||||o|||||||||||||
3' TTACTCTTAGGACTACTACGACGTCATCTCTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAT (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 7 | 2.33333 | 0 | 1267 | 0.5 | plot | alignment | MDP0000296716 | 5' AGAATCTTGATGATGCTGCAG 3'
||||||o||||||||||||||
3' TTACTCTTAGGACTACTACGACGTCATCTCTT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 2e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR403a | TTAGATTCACGCACAAACTCG | 5 | 2.5 | 0.05 | 1123 | 3.5 | plot | alignment | MDP0000141837 | 5' TTAGATTCACGCACAAACTCG 3'
|o|o|||||| |||| ||||o
3' TTGAAGTTTAAGTG-GTGTATGAGTTGTTTAA 5' |
UniProt best hit: sp|P40235|HHP1_SCHPO (E-value = 8e-55) miRBase: no hits |
TTAGATTCACGCACAAACTCG (0 mismatches) |
mdm-MIR85N | TGGCACCAAAGTCACCACCCG | 62 | 31 | 0 | 1230 | 1.5 | plot | alignment | MDP0000226045 | 5' TGGCACCAAAGTCACCACCCG 3'
||||||||||||||||||| o
3' GAAAACCGTGGTTTCAGTGGTGGTTTGACTAC 5' |
UniProt best hit: sp|P43309|PPO_MALDO (E-value = 3e-119) miRBase: no hits |
None | mdm-MIR156h | TGACAGAAGAGAGTGAGCAC | 9 | 4.5 | 0.01 | 403 | 2 | plot | alignment | gnl|UG|Mdo#S21625786 | 5' TGACAGAAGAGAGTGAGCAC 3'
||||||||||||| |||||
3' CCCAACTGTCTTCTCTCTCTCGTATAGTATAC 5' |
UniProt best hit: sp|Q38740|SBP2_ANTMA (E-value = 1e-38) miRBase: no hits |
TGACAGAAGAGAGTGAGCACT (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 472 | 2.5 | plot | alignment | MDP0000233739 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-144) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR172e | AGAATCTTGATGATGCTGCAT | 43 | 21.5 | 0 | 1300 | 2.5 | plot | alignment | MDP0000285955 | 5' AGAATCTTGATGATGCTGCAT 3'
|||||o|||||||||||||
3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 9e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAT (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 43 | 21.5 | 0 | 1300 | 2 | plot | alignment | MDP0000285955 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o|||||||||||||o
3' CTACCCTTAGGACTACTACGACGTTACCTTAT 5' |
UniProt best hit: sp|Q9SK03|RAP27_ARATH (E-value = 9e-72) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR210N | CAATGGGGAGGAGTCATTCGTA | 11 | 1.83333 | 0.02 | 1416 | 3.5 | plot | alignment | MDP0000141403 | 5' CAATGGGGAGGAGTCATTCGTA 3'
||||||o|||o||| |o| |||
3' TTAAGTTACCTCTCTTCATTGATCATCCTAGT 5' |
UniProt best hit: sp|Q9C8N5|STOP1_ARATH (E-value = 0.0) miRBase: no hits |
None | mdm-MIR267N | TCCATAATTTTTCCAGATCAA | 11 | 11 | 0.02 | 2440 | 2.5 | plot | alignment | MDP0000193434 | 5' TCCATAATTTTTCCAGATCAA 3'
||||||| |||||||o ||||
3' ACTTAGGTATT-AAAAGGTTCAGTTGTTCTGA 5' |
UniProt: no hits miRBase: no hits |
None | mdm-MIR32N | TCTTGCTCAAATGAGTATTCCA | 12493 | 12493 | 0 | 379 | 1 | plot | alignment | MDP0000124555 | 5' TCTTGCTCAAATGAGTATTCCA 3'
||||||||||||||| ||||||
3' TAAGAGAACGAGTTTACTCTTAAGGTCATCAA 5' |
UniProt best hit: sp|Q9SEI0|WER_ARATH (E-value = 1e-52) miRBase: no hits |
TCTTGCTCAAATGAGTATTCCA (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 50 | 7.14286 | 0.03 | 187 | 4 | plot | alignment | MDP0000160289 | 5' TCTTTCCTATCCCTCCCATTCC 3'
| || ||o|| ||||||||o||
3' CAACAAAACGGGTAAGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA39|RGA4_SOLBU (E-value = 2e-90) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 6 | 6 | 0.05 | 676 | 3 | plot | alignment | MDP0000455346 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||| || || |||||||||||
3' CATCAGAACGGTTATGGAGGGTAAGGGGTATA 5' |
UniProt best hit: sp|Q40392|TMVRN_NICGU (E-value = 4e-169) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 304 | 31.5152 | 0.01 | 646 | 2 | plot | alignment | MDP0000160232 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTAAGGAGGGTAGGGATCTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 9e-114) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 9 | 4.5 | 0.05 | 124 | 3 | plot | alignment | MDP0000739900 | 5' AGAATCTTGATGATGCTGCAG 3'
|||| | |||||| |||||||
3' CTCTTCTT-GTACTACTTCGACGTCGAACTAA 5' |
UniProt best hit: sp|Q9SZI6|GAT22_ARATH (E-value = 1e-22) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR32N | TCTTGCTCAAATGAGTATTCCA | 50 | 50 | 0 | 337 | 3 | plot | alignment | MDP0000261265 | 5' TCTTGCTCAAATGAGTATTCCA 3'
| ||||||||||||| |||||
3' TAGAAAAACGAGTTTACTCTCAAGGTCATTAA 5' |
UniProt best hit: sp|Q9SEI0|WER_ARATH (E-value = 3e-51) miRBase: no hits |
TCTTGCTCAAATGAGTATTCCA (0 mismatches) |
mdm-MIR115N | CATAACAAATTATTACTCAGT | 14 | 4.66667 | 0.05 | 250 | 4 | plot | alignment | MDP0000279314 | 5' CATAACAAATTATTACTCAGT 3'
|||||||||| ||| || ||
3' CGTTGTATTGTTTACTAACGACTCTAAAAATT 5' |
UniProt: no hits miRBase: no hits |
None | mdm-MIR45N | TCGGACCAGGCTTCATTCCCC | 38 | 38 | 0 | 571 | 2.5 | plot | alignment | MDP0000426630 | 5' TCGGACCAGGCTTCATTCCCC 3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTCCGTAGA 5' |
UniProt best hit: sp|Q9SE43|REV_ARATH (E-value = 0.0) miRBase best hit: pta-MIR166c (E-value = 3e-39) NOTE: reverse complement |
TCGGACCAGGCTTCATTCCCC (0 mismatches) |
mdm-MIR32N | TCTTGCTCAAATGAGTATTCCA | 7 | 7 | 0 | 322 | 1 | plot | alignment | MDP0000578193 | 5' TCTTGCTCAAATGAGTATTCCA 3'
|||||||||||||||| |||||
3' TCGAAGAACGAGTTTACTCACAAGGTTACCAA 5' |
UniProt best hit: sp|Q9SEI0|WER_ARATH (E-value = 4e-71) miRBase: no hits |
TCTTGCTCAAATGAGTATTCCA (0 mismatches) |
mdm-MIR535d | TGACGACGAGAGAGAGCACGC | 8 | 8 | 0 | 803 | 3 | plot | alignment | MDP0000297978 | 5' TGAC-GACGAGAGAGAGCACGC 3'
|||| || |||||||||||||
3' TAAACTGTCTTCTCTCTCTCGTGCCGAACTCA 5' |
UniProt best hit: sp|Q700W2|SPL9_ARATH (E-value = 3e-74) miRBase: no hits |
TGACGACGAGAGAGAGCACGC (0 mismatches) |
mdm-MIR535b | TGACAAGGAGAGAGAGCACGC | 8 | 8 | 0 | 803 | 2.5 | plot | alignment | MDP0000297978 | 5' TGACA-AGGAGAGAGAGCACGC 3'
||||| |o|||||||||||||
3' TAAACTGTCTTCTCTCTCTCGTGCCGAACTCA 5' |
UniProt best hit: sp|Q700W2|SPL9_ARATH (E-value = 3e-74) miRBase: no hits |
TGACAAGGAGAGAGAGCACGC (0 mismatches) |
mdm-MIR535a | TGACAACGAGAGAGAGCACGC | 8 | 8 | 0.01 | 803 | 3 | plot | alignment | MDP0000297978 | 5' TGACA-ACGAGAGAGAGCACGC 3'
||||| | |||||||||||||
3' TAAACTGTCTTCTCTCTCTCGTGCCGAACTCA 5' |
UniProt best hit: sp|Q700W2|SPL9_ARATH (E-value = 3e-74) miRBase: no hits |
TGACAACGAGAGAGAGCACGC (0 mismatches) |
mdm-MIR85N | TGGCACCAAAGTCACCACCCG | 49 | 7 | 0 | 1692 | 2 | plot | alignment | MDP0000207799 | 5' TGGCACCAAAGTCACCACCCG 3'
o|||||||||||||||||| o
3' GAAAGCCGTGGTTTCAGTGGTGGTTTGAC AC 5' |
UniProt best hit: sp|P43309|PPO_MALDO (E-value = 0.0) miRBase: no hits |
None | mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 580 | 2.5 | plot | alignment | MDP0000312668 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 4e-40) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 118 | 2 | plot | alignment | MDP0000266458 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATATTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 5e-64) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR89N | AGAGAAAATTCATTCCAACGC | 4 | 4 | 0.02 | 607 | 3 | plot | alignment | gnl|UG|Mdo#S43678563 | 5' AGAGAAAATTCATTCCAACGC 3'
|||||| ||||||| |||||
3' AGTGGCTCTTTGAAGTAAGTTTGCGGGTGACC 5' |
UniProt best hit: sp|Q39255|SKP1A_ARATH (E-value = 7e-74) miRBase: no hits |
None | mdm-MIR227N | AAGTTCATTCAAACACCATGT | 20 | 6.66667 | 0.05 | 1639 | 3 | plot | alignment | MDP0000173362 | 5' AAG-TTCATTCAAACACCATGT 3'
||| |o||||||||||||||o
3' ACGTTCGAGGTAAGTTTGTGGTATCGGAAGGT 5' |
UniProt best hit: sp|Q55FJ2|WDR91_DICDI (E-value = 2e-26) miRBase: no hits |
None | mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000266073 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTACGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 2e-113) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 9 | 4.5 | 0.04 | 127 | 3 | plot | alignment | MDP0000237740 | 5' AGAATCTTGATGATGCTGCAG 3'
|||| | |||||| |||||||
3' CTCTTCTT-GTACTACTTCGACGTCGAACTAA 5' |
UniProt best hit: sp|Q5HZ36|GAT21_ARATH (E-value = 9e-20) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR172l | GCAGCATCATCAAGATTCACA | 14 | 14 | 0.01 | 587 | 4 | plot | alignment | MDP0000137890 | 5' GCAGCATCATCAAGATTCACA 3'
o||| |o|||||| ||| |||
3' TTCATGTCTTGGTAGTTGTAACTGTCAATGAC 5' |
UniProt best hit: sp|Q5NVI3|RED_PONAB (E-value = 1e-43) miRBase: no hits |
GCAGCAGCATCAAGATTCACA (1 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000211316 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGAT TTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-122) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR156ab | GCTCTCTATGCTTCTGTCATC | 7 | 3.5 | 0.02 | 440 | 4 | plot | alignment | MDP0000742828 | 5' GCTCTCTATGCTTCTGTCATC 3'
||||| | |||o||||o|||
3' TTTTCGAGATAAACGGAGACGGTAAGATACTC 5' |
UniProt best hit: sp|Q09WV9|RR7_MORIN (E-value = 7e-104) miRBase: no hits |
GCTCTCTATGCTTCTGTCATC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 18 | 4.5 | 0.02 | 38 | 3 | plot | alignment | MDP0000367358 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||o||||o||||| |||||||
3' GTCGAGGAAGGGTAGGGTAGGTAAGGAGGGTG 5' |
UniProt: no hits miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 284 | 31.5556 | 0 | 403 | 2.5 | plot | alignment | MDP0000167895 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 5e-124) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 7 | 2.33333 | 0 | 661 | 2.5 | plot | alignment | MDP0000195139 | 5' TCTTTCCTATCCCTCCCATTCC 3'
||||o||o|| ||||||||o||
3' CAACAGAAGGGGTAAGGAGGGTAGGGCTGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-145) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR45N | TCGGACCAGGCTTCATTCCCC | 17 | 5.66667 | 0.02 | 598 | 2.5 | plot | alignment | MDP0000050082 | 5' TCGGACCAGGCTTCATTCCCC 3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
UniProt best hit: sp|Q6AST1|HOX32_ORYSJ (E-value = 0.0) miRBase best hit: pta-MIR166c (E-value = 1e-27) NOTE: reverse complement |
TCGGACCAGGCTTCATTCCCC (0 mismatches) |
mdm-MIR115N | CATAACAAATTATTACTCAGT | 14 | 4.66667 | 0.02 | 616 | 3 | plot | alignment | MDP0000174950 | 5' CATAACAAATTATTACTCAGT 3'
|||||||||||||| || ||
3' CGTTGTATTGTTTAATAAAGACTCCATAAATT 5' |
UniProt: no hits miRBase: no hits |
None | mdm-MIR396b | TTCCACAGCTTTCTTGAACTG | 91 | 45.5 | 0 | 433 | 2.5 | plot | alignment | gnl|UG|Mdo#S56529540 | 5' TTCCAC-AGCTTTCTTGAACTG 3'
|||||| ||||||||||||| o
3' ACTAAGGTGTTCGAAAGAACTTGCTATTGCCG 5' |
UniProt: no hits miRBase: no hits |
TTCCACAGCTTTCTTGAACTGT (0 mismatches) |
mdm-MIR396a | TTCCACAGCTTTCTTGAACAG | 91 | 45.5 | 0.02 | 433 | 2.5 | plot | alignment | gnl|UG|Mdo#S56529540 | 5' TTCCAC-AGCTTTCTTGAACAG 3'
|||||| ||||||||||||| o
3' ACTAAGGTGTTCGAAAGAACTTGCTATTGCCG 5' |
UniProt: no hits miRBase: no hits |
TTCCACAGCTTTCTTGAACAG (0 mismatches) |
mdm-MIR227N | AAGTTCATTCAAACACCATGT | 20 | 6.66667 | 0.03 | 106 | 3.5 | plot | alignment | MDP0000259854 | 5' AAG-TTCATTCAAACACCATGT 3'
||| |o||||||||||||||
3' ACGTTCGAGGTAAGTTTGTGGTAATAGGCAAC 5' |
UniProt best hit: sp|Q38845|2AAA_ARATH (E-value = 1e-27) miRBase: no hits |
None | mdm-MIR32N | TCTTGCTCAAATGAGTATTCCA | 274 | 274 | 0 | 198 | 1.5 | plot | alignment | gnl|UG|Mdo#S51753801 | 5' TCTTGCTCAAATGAGTATTCCA 3'
|||||||||||||||| o||||
3' CATAAGAACGAGTTTACTCACGAGGTCCACTT 5' |
UniProt: no hits miRBase: no hits |
TCTTGCTCAAATGAGTATTCCA (0 mismatches) |
mdm-MIR85N | TGGCACCAAAGTCACCACCCG | 49 | 7 | 0 | 744 | 3 | plot | alignment | MDP0000607509 | 5' TGGCACCAAAGTCACCACCCG 3'
o|||||||||||||| ||| o
3' GAAAGCCGTGGTTTCAGTGATGGTTTGATGAC 5' |
UniProt best hit: sp|P43309|PPO_MALDO (E-value = 1e-48) miRBase: no hits |
None | mdm-MIR482c | TCTTTCCTAACCCTCCCATTCC | 2 | 2 | 0 | 650 | 3 | plot | alignment | MDP0000480725 | 5' TCTTTCCTAA-CCCTCCCATTCC 3'
|||||||o|| |||o|||||| |
3' CAACAGAAAGGGTTTGGGGGGGTAA GGGTCT 5' |
UniProt best hit: sp|Q9SX38|DRL4_ARATH (E-value = 2e-34) miRBase: no hits |
TCTTTCCTAACCCTCCCATTCC (0 mismatches) |
mdm-MIR398a | TGTGTTCTCAGGTCACCCCTT | 8 | 8 | 0.01 | 141 | 2.5 | plot | alignment | gnl|UG|Mdo#S35708882 | 5' TGTGTTCTCAGGTCACCCCTT 3'
o||| ||||||| ||||||||
3' AGCTGCACTAGAGTCCTGTGGGGAAACTCTCG 5' |
UniProt best hit: sp|Q07796|SODC_IPOBA (E-value = 3e-95) miRBase: no hits |
TGTGTTCTCAGGTCACCCCTT (0 mismatches) |
mdm-MIR156h | TGACAGAAGAGAGTGAGCAC | 9 | 4.5 | 0.01 | 610 | 2 | plot | alignment | gnl|UG|Mdo#S35708880 | 5' TGACAGAAGAGAGTGAGCAC 3'
||||||||||||| |||||
3' CCCAACTGTCTTCTCTCTCTCGTATAGTATAC 5' |
UniProt best hit: sp|Q38740|SBP2_ANTMA (E-value = 3e-37) miRBase: no hits |
TGACAGAAGAGAGTGAGCACT (0 mismatches) |
mdm-MIR164c | TGGAGAAGCAGGGCACGTGCA | 942 | 471 | 0 | 655 | 2.5 | plot | alignment | MDP0000121265 | 5' TGGAGAAGCAGGGCACGTGCA 3'
||||||||||||||||||o
3' CCCAACCTCTTCGTCCCGTGCATTACCCTGAG 5' |
UniProt best hit: sp|Q9FLJ2|NC100_ARATH (E-value = 3e-141) miRBase: no hits |
TGGAGAAGCAGGGCACGTGCA (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 118 | 3 | plot | alignment | MDP0000248321 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||| ||||o||
3' CAACAGAAAGGGTACGGAAGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q9LRR4|R13L1_ARATH (E-value = 2e-17) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 514 | 3 | plot | alignment | MDP0000256429 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||| ||||o||
3' CAACAGAAAGGGTACGGAAGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XBQ9|RGA2_SOLBU (E-value = 9e-31) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 7 | 7 | 0 | 38 | 3 | plot | alignment | MDP0000776953 | 5' TCTTTC-CTATCCCTCCCATTCC 3'
|||||| ||||||||||| |||
3' GAGAGAAAGAGATAGGGAGGGAAAGAGGGACG 5' |
UniProt best hit: sp|Q01402|NDK2_SPIOL (E-value = 6e-97) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR167i | TGAAGCTGCCAGCATGATCTTA | 46 | 7.66667 | 0.03 | 2468 | 3.5 | plot | alignment | gnl|UG|Mdo#S35708860 | 5' TGAAGCTGCCAGCATGATCTTA 3'
||||||||||| ||||||o|
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
UniProt best hit: sp|Q9ZTX8|ARFF_ARATH (E-value = 0.0) miRBase: no hits |
TGAAGCTGCCAGCATGATCTTA (0 mismatches) |
mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000299465 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 4e-122) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR134N | TAACCTTATTTGATTTCACGA | 4 | 4 | 0.05 | 466 | 3.5 | plot | alignment | MDP0000329194 | 5' TAACCTTATTTGATTTCACGA 3'
o|||||| ||||||o|| |o|
3' ACTTGTTGGAAAAAACTAGAGAGTTACCGAAC 5' |
UniProt best hit: sp|Q944A9|NPS11_ARATH (E-value = 4e-127) miRBase: no hits |
None | mdm-MIR482d | TCTTTCCTATCCCTCCCATTCC | 288 | 26.1818 | 0 | 634 | 2 | plot | alignment | MDP0000217718 | 5' TCTTTCCTATCCCTCCCATTCC 3'
|||||||o|| ||||||||o||
3' CAACAGAAAGGGTATGGAGGGTAGGGATGTTA 5' |
UniProt best hit: sp|Q7XA40|RGA3_SOLBU (E-value = 1e-32) miRBase: no hits |
TCTTTCCTATCCCTCCCATTCC (0 mismatches) |
mdm-MIR167c | TGAAGCTGCCAGCATGATCTA | 18 | 9 | 0.05 | 1193 | 3 | plot | alignment | MDP0000137461 | 5' TGAAGCTGCCAGCATGATCTA 3'
||||||||||| |||||||
3' CTTATGTTCGACGGTCGGACTAGATTCTGCTA 5' |
UniProt best hit: sp|Q9FGV1|ARFH_ARATH (E-value = 1e-102) miRBase: no hits |
TGAAGCTGCCAGCATGATCTAA (0 mismatches) |
mdm-MIR164c | TGGAGAAGCAGGGCACGTGCA | 942 | 471 | 0 | 655 | 2.5 | plot | alignment | MDP0000911724 | 5' TGGAGAAGCAGGGCACGTGCA 3'
||||||||||||||||||o
3' CCCAACCTCTTCGTCCCGTGCATTACCCTGAG 5' |
UniProt best hit: sp|Q9FLJ2|NC100_ARATH (E-value = 1e-143) miRBase: no hits |
TGGAGAAGCAGGGCACGTGCA (0 mismatches) |
mdm-MIR45N | TCGGACCAGGCTTCATTCCCC | 17 | 5.66667 | 0.01 | 598 | 2.5 | plot | alignment | MDP0000943529 | 5' TCGGACCAGGCTTCATTCCCC 3'
o||||||||||||||| |||
3' CTTAGGCCTGGTCCGAAGTA-GGGTTAGTAGA 5' |
UniProt best hit: sp|Q6AST1|HOX32_ORYSJ (E-value = 0.0) miRBase best hit: pta-MIR166c (E-value = 3e-25) NOTE: reverse complement |
TCGGACCAGGCTTCATTCCCC (0 mismatches) |
mdm-MIR32N | TCTTGCTCAAATGAGTATTCCA | 379 | 379 | 0 | 379 | 2 | plot | alignment | MDP0000931057 | 5' TCTTGCTCAAATGAGTATTCCA 3'
| ||||||||||||| ||||||
3' TAAGAAAACGAGTTTACTCTTAAGGTCATCAA 5' |
UniProt best hit: sp|Q9SEI0|WER_ARATH (E-value = 4e-51) miRBase: no hits |
TCTTGCTCAAATGAGTATTCCA (0 mismatches) |
mdm-MIR156ab | GCTCTCTATGCTTCTGTCATC | 9 | 9 | 0.05 | 1391 | 3 | plot | alignment | MDP0000224116 | 5' GCTCTCTATGCTTCTGTCATC 3'
||o|| ||||||o|| |||||
3' TCTACGGGATATACGAGGA-AGTAGCATGTTC 5' |
UniProt best hit: sp|Q8LBH2|CAP8_ARATH (E-value = 0.0) miRBase: no hits |
GCTCTCTATGCTTCTGTCATC (0 mismatches) |
mdm-MIR172e | AGAATCTTGATGATGCTGCAT | 5 | 5 | 0.01 | 1273 | 2.5 | plot | alignment | MDP0000200319 | 5' AGAATCTTGATGATGCTGCAT 3'
|||||o|||||||||||||
3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5' |
UniProt best hit: sp|P47927|AP2_ARATH (E-value = 3e-89) miRBase: no hits |
AGAATCTTGATGATGCTGCAT (0 mismatches) |
mdm-MIR172o | AGAATCTTGATGATGCTGCAG | 5 | 5 | 0 | 1273 | 1.5 | plot | alignment | MDP0000200319 | 5' AGAATCTTGATGATGCTGCAG 3'
|||||o||||||||||||||
3' CTCCCCTTAGGACTACTACGACGTCGTCTCTT 5' |
UniProt best hit: sp|P47927|AP2_ARATH (E-value = 3e-89) miRBase: no hits |
AGAATCTTGATGATGCTGCAG (0 mismatches) |
mdm-MIR396c | TTCCACAGCTTTCTTGAACTT | 91 | 45.5 | 0 | 383 | 3 | plot | alignment | MDP0000276970 | 5' TTCCAC-AGCTTTCTTGAACTT 3'
|||||| |||||||||||||
3' ACTAAGGTGTTCGAAAGAACTTGCTATTGCCG 5' |
UniProt: no hits miRBase: no hits |
TTCCACAGCTTTCTTGAACTT (0 mismatches) |
mdm-MIR167i | TGAAGCTGCCAGCATGATCTTA | 46 | 7.66667 | 0.04 | 2429 | 3.5 | plot | alignment | MDP0000232417 | 5' TGAAGCTGCCAGCATGATCTTA 3'
||||||||||| ||||||o|
3' TTTATGTTCGACGGTCGGACTAGAGTGTCCCA 5' |
UniProt best hit: sp|Q9ZTX8|ARFF_ARATH (E-value = 0.0) miRBase: no hits |
TGAAGCTGCCAGCATGATCTTA (0 mismatches) |
Entries Per Page
Displaying Page of