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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED CN880060no hits with E-value < 1e-10 3 19.828 1 - 21 582 - 602 Cleavage 
TTCAAGTTCTTTCGACACCTT
::::: : :.:::::::::.:
AAGTTGATGGAAGCTGTGGGA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED TC82283no hits with E-value < 1e-10 3 22.852 1 - 20 181 - 201 Cleavage 
TCAAGTTCTTTCGNACACCTT
 :::::::::::: :::::::
CGTTCAAGAAAGCCTGTGGAA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED TC92220no hits with E-value < 1e-10 3 23.039 1 - 20 85 - 105 Cleavage 
TCAAGTTCTTTCGNACACCTT
 :::::::::::: :::::::
CGTTCAAGAAAGCCTGTGGAA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED TC66885no hits with E-value < 1e-10 3 19.713 1 - 20 1117 - 1137 Cleavage 
TCAAGTTCTTTCGNACACCTT
 :::::::::::: :::::::
CGTTCAAGAAAGCCTGTGGAA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED MDP0000193012no hits with E-value < 1e-10 2.5 20.772 1 - 21 661 - 681 Cleavage 
TTCAAGTTCTTTCGACACCTT
.::: ::::::::.:::::.:
GAGTACAAGAAAGTTGTGGGA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED MDP0000501816no hits with E-value < 1e-10 2.5 20.772 1 - 21 661 - 681 Cleavage 
TTCAAGTTCTTTCGACACCTT
.::: ::::::::.:::::.:
GAGTACAAGAAAGTTGTGGGA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED MDP0000677637no hits with E-value < 1e-10 2.5 16.968 1 - 21 2533 - 2553 Cleavage 
TTCAAGTTCTTTCGACACCTT
:::::::. :::::::::::
AAGTTCAGTAAAGCTGTGGAC
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED MDP0000603111Clavaminate synthase-like protein At3g21360
E-value: 2e-63
more		 3 22.036 1 - 21 775 - 795 Cleavage 
TTCAAGTTCTTTCGACACCTT
.:::::  :.:::::::::::
GAGTTCCCGGAAGCTGTGGAA
mdm-MIR396c vvi-miR396b TTCCACAGCTTTCTTGAACTT KNOWN and CONSERVED MDP0000314475Clavaminate synthase-like protein At3g21360
E-value: 4e-60
more		 3 22.036 1 - 21 859 - 879 Cleavage 
TTCAAGTTCTTTCGACACCTT
.:::::  :.:::::::::::
GAGTTCCCGGAAGCTGTGGAA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 1 (9)
CONSERVED: 0 (0)
NOVEL: 0 (0)