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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED CN931406no hits with E-value < 1e-10 3 16.364 1 - 21 62 - 82 Translation 
GTCAAGTTCTTTCGACACCTT
::: : :::::: ::::::::
CAGCTGAAGAAATCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED TC92220no hits with E-value < 1e-10 3 23.039 1 - 21 84 - 105 Cleavage 
GTCAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED TC66885no hits with E-value < 1e-10 3 19.713 1 - 21 1116 - 1137 Cleavage 
GTCAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED TC82283no hits with E-value < 1e-10 3 22.852 1 - 20 181 - 201 Cleavage 
TCAAGTTCTTTCGNACACCTT
 :::::::::::: :::::::
CGTTCAAGAAAGCCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED GO511690no hits with E-value < 1e-10 3 17.585 1 - 21 418 - 438 Cleavage 
GTCAAGTTCTTTCGACACCTT
::::  : :::::::::::::
CAGTGGATGAAAGCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000128506no hits with E-value < 1e-10 3 15.699 1 - 21 640 - 660 Cleavage 
GTCAAGTTCTTTCGACACCTT
:.::::::::.::.:::: ::
CGGTTCAAGAGAGTTGTGAAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000665457no hits with E-value < 1e-10 3 23 1 - 21 174 - 194 Cleavage 
GTCAAGTTCTTTCGACACCTT
:.:: :::::.::.::::::.
CGGTCCAAGAGAGTTGTGGAG
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000193012no hits with E-value < 1e-10 3 20.772 1 - 21 661 - 681 Cleavage 
GTCAAGTTCTTTCGACACCTT
 ::: ::::::::.:::::.:
GAGTACAAGAAAGTTGTGGGA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000501816no hits with E-value < 1e-10 3 20.772 1 - 21 661 - 681 Cleavage 
GTCAAGTTCTTTCGACACCTT
 ::: ::::::::.:::::.:
GAGTACAAGAAAGTTGTGGGA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000160829Aluminum-activated malate transporter 8
E-value: 1e-122
more		 2.5 17.173 1 - 21 1588 - 1608 Cleavage 
GTCAAGTTCTTTCGACACCTT
:: ::::: :::::::::::.
CACTTCAAAAAAGCTGTGGAG
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000553830Aluminum-activated malate transporter 8
E-value: 3e-104
more		 2.5 21.766 1 - 21 1585 - 1605 Cleavage 
GTCAAGTTCTTTCGACACCTT
:: ::::: :::::::::::.
CACTTCAAAAAAGCTGTGGAG
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000261112no hits with E-value < 1e-10 3 14.942 1 - 21 410 - 431 Cleavage 
GTCAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396b gma-miR396e TTCCACAGCTTTCTTGAACTG KNOWN and CONSERVED MDP0000243533no hits with E-value < 1e-10 3 18.566 1 - 21 648 - 669 Cleavage 
GTCAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 1 (13)
CONSERVED: 0 (0)
NOVEL: 0 (0)