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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED TC92220no hits with E-value < 1e-10 3 23.039 1 - 21 84 - 105 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED TC66885no hits with E-value < 1e-10 3 19.713 1 - 21 1116 - 1137 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED TC82283no hits with E-value < 1e-10 3 22.852 1 - 20 181 - 201 Cleavage 
ACAAGTTCTTTCGNACACCTT
 :::::::::::: :::::::
CGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000194223Uncharacterized basic helix-loop-helix protein At1g64625
E-value: 8e-52
more		 2.5 16.84 1 - 21 1157 - 1177 Cleavage 
GACAAGTTCTTTCGACACCTT
:: ::::::.::::::::::
CTATTCAAGGAAGCTGTGGAT
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000172963Uncharacterized basic helix-loop-helix protein At1g64625
E-value: 2e-48
more		 3 18.175 1 - 21 1187 - 1207 Cleavage 
GACAAGTTCTTTCGACACCTT
:: ::::::.:::.::::::
CTATTCAAGGAAGTTGTGGAT
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000768962Pentatricopeptide repeat-containing protein At5g48910
E-value: 0.0
more		 3 21.06 1 - 21 1108 - 1128 Cleavage 
GACAAGTTCTTTCGACACCTT
.: ::.:::.:.:::::::::
TTTTTTAAGGAGGCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000249412Probable cytokinin riboside 5'-monophosphate phosphoribohydrolas
E-value: 8e-58
more		 3 15.998 1 - 21 712 - 732 Cleavage 
GACAAGTTCTTTCGACACCTT
:::::..: :::: :::::::
CTGTTTGACAAAGGTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000236128Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8
E-value: 4e-56
more		 3 18.391 1 - 21 703 - 723 Cleavage 
GACAAGTTCTTTCGACACCTT
:::::..: :::: :::::::
CTGTTTGATAAAGGTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000297656Probable cytokinin riboside 5'-monophosphate phosphoribohydrolas
E-value: 3e-42
more		 3 18.391 1 - 21 1621 - 1641 Cleavage 
GACAAGTTCTTTCGACACCTT
:::::..: :::: :::::::
CTGTTTGATAAAGGTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000261112no hits with E-value < 1e-10 3 14.942 1 - 21 410 - 431 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000243533no hits with E-value < 1e-10 3 18.566 1 - 21 648 - 669 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000808163no hits with E-value < 1e-10 3 19.713 1 - 21 846 - 867 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000274400no hits with E-value < 1e-10 3 15.407 1 - 21 651 - 672 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA
mdm-MIR396a mdm-miR396a TTCCACAGCTTTCTTGAACAG KNOWN and CONSERVED MDP0000322576no hits with E-value < 1e-10 3 14.942 1 - 21 900 - 921 Cleavage 
GACAAGTTCTTTCGNACACCTT
: :::::::::::: :::::::
CCGTTCAAGAAAGCCTGTGGAA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 1 (14)
CONSERVED: 0 (0)
NOVEL: 0 (0)