Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC93915	no hits with E-value < 1e-10	2	11.886	1 - 21	588 - 608	Cleavage	CGATACCAGTTCTTTTTTCGT ::::::: :::::::::::: GCTATGGAGAAGAAAAAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC69823	no hits with E-value < 1e-10	2.5	19.78	1 - 21	497 - 517	Cleavage	CGATACCAGTTCTTTTTTCGT :::: :: :::::::.::::: GCTAGGGCCAAGAAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC70332	no hits with E-value < 1e-10	2.5	19.975	1 - 21	899 - 919	Cleavage	CGATACCAGTTCTTTTTTCGT :::: :: :::::::.::::: GCTAAGGCCAAGAAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC67495	no hits with E-value < 1e-10	3	18.75	1 - 21	964 - 984	Cleavage	CGATACCAGTTCTTTTTTCGT :. :::::.::::::.:.::: GTCATGGTTAAGAAAGAGGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC68594	no hits with E-value < 1e-10	2.5	23.31	1 - 21	733 - 753	Cleavage	CGATACCAGTTCTTTTTTCGT ::: ::::::::: .:::::: GCTCTGGTCAAGATGAAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC61188	no hits with E-value < 1e-10	3	21.848	1 - 21	872 - 892	Cleavage	CGATACCAGTTCTTTTTTCGT :. :::::.::::::.:.::: GTCATGGTTAAGAAAGAGGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	TC85171	no hits with E-value < 1e-10	3	13.967	1 - 21	414 - 434	Cleavage	CGATACCAGTTCTTTTTTCGT :.::::: : :::::::.::: GTTATGGACCAGAAAAAGGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000127763	Zinc finger protein 346 E-value: 3e-11 more	2	18.151	1 - 21	1522 - 1542	Cleavage	CGATACCAGTTCTTTTTTCGT ::::::::.:::::: ::::: GCTATGGTTAAGAAACAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000264041	no hits with E-value < 1e-10	3	22.094	1 - 21	745 - 765	Cleavage	CGATACCAGTTCTTTTTTCGT :.:::::::::::::::: : GTTATGGTCAAGAAAAAATCT
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000143692	U-box domain-containing protein 51 E-value: 5e-13 more	2	12.24	1 - 21	1357 - 1377	Cleavage	CGATACCAGTTCTTTTTTCGT ::::::: :::::::::::: GCTATGGAGAAGAAAAAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000446855	no hits with E-value < 1e-10	2.5	16.419	1 - 21	1948 - 1968	Cleavage	CGATACCAGTTCTTTTTTCGT :.: ::::::::.:::::::. GTTTTGGTCAAGGAAAAAGCG
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000245412	Probable LRR receptor-like serine/threonine-protein kinase RLK E-value: 8e-120 more	2	12.24	1 - 21	2635 - 2655	Cleavage	CGATACCAGTTCTTTTTTCGT ::::::: :::::::::::: GCTATGGAGAAGAAAAAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000308027	Triose phosphate/phosphate translocator, non-green plastid, chlo E-value: 3e-139 more	3	21.848	1 - 21	1123 - 1143	Cleavage	CGATACCAGTTCTTTTTTCGT :. :::::.::::::.:.::: GTCATGGTTAAGAAAGAGGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000261082	Phosphoenolpyruvate/phosphate translocator 1, chloroplastic E-value: 7e-134 more	3	18.833	1 - 21	1465 - 1485	Cleavage	CGATACCAGTTCTTTTTTCGT :. :::::.::::::.:.::: GTCATGGTTAAGAAAGAGGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000221892	26S proteasome non-ATPase regulatory subunit 1 E-value: 0.0 more	2.5	19.78	1 - 21	3004 - 3024	Cleavage	CGATACCAGTTCTTTTTTCGT :::: :: :::::::.::::: GCTAGGGCCAAGAAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000141874	26S proteasome non-ATPase regulatory subunit 1 E-value: 0.0 more	2.5	19.975	1 - 21	3040 - 3060	Cleavage	CGATACCAGTTCTTTTTTCGT :::: :: :::::::.::::: GCTAAGGCCAAGAAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000274002	26S proteasome non-ATPase regulatory subunit 1 E-value: 5e-132 more	2.5	10.893	1 - 21	2407 - 2427	Cleavage	CGATACCAGTTCTTTTTTCGT :::: :: :::::::.::::: GCTAAGGCCAAGAAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000948729	no hits with E-value < 1e-10	2.5	7.535	1 - 20	299 - 318	Cleavage	GATACCAGTTCTTTTTTCGT : :::::::::::.::::.. CAATGGTCAAGAAGAAAGTG
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000137948	no hits with E-value < 1e-10	3	16.667	1 - 20	1616 - 1635	Cleavage	GATACCAGTTCTTTTTTCGT .:.:::::::::::.::: : TTGTGGTCAAGAAAGAAGGA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000156547	Pentatricopeptide repeat-containing protein At3g53700, chloropla E-value: 5e-107 more	3	17.181	1 - 21	718 - 738	Translation	CGATACCAGTTCTTTTTTCGT : :::::::: :.:.:::::: GATATGGTCATGGAGAAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000430686	LOB domain-containing protein 2 E-value: 5e-15 more	3	20.201	1 - 21	979 - 999	Translation	CGATACCAGTTCTTTTTTCGT :.: :::::::: ::.::::: GTTTTGGTCAAGCAAGAAGCA
mdm-MIR279N	None	TGCTTTTTTCTTGACCATAGC	NOVEL	MDP0000258451	no hits with E-value < 1e-10	3	13.967	1 - 21	1861 - 1881	Cleavage	CGATACCAGTTCTTTTTTCGT :.::::: : :::::::.::: GTTATGGACCAGAAAAAGGCA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 1 (22)

name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex