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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED CN933928no hits with E-value < 1e-10 2.5 23.713 1 - 21 209 - 229 Cleavage 
TTCCCGTTGAGAGGAAACCGT
 .:::::: ::::::::::::
TGGGGCAAATCTCCTTTGGCA
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED CV880167no hits with E-value < 1e-10 3 17.006 1 - 21 216 - 236 Cleavage 
TTCCCGTTGAGAGGAAACCGT
::::: :::::::.: :::::
AAGGGGAACTCTCTTCTGGCA
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED MDP0000900762TMV resistance protein N
E-value: 8e-33
more		 3 18.119 1 - 21 596 - 616 Cleavage 
TTCCCGTTGAGAGGAAACCGT
.:::::::: .::::::::..
GAGGGCAACATTCCTTTGGTG
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED MDP0000500340no hits with E-value < 1e-10 3 14.962 1 - 21 1752 - 1772 Cleavage 
TTCCCGTTGAGAGGAAACCGT
.:::::::: .::::::::..
GAGGGCAACATTCCTTTGGTG
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED MDP0000200335ABC transporter G family member 11
E-value: 0.0
more		 3 14.199 1 - 21 719 - 739 Cleavage 
TTCCCGTTGAGAGGAAACCGT
:: :: :.:::::.:::::::
AACGGAAGCTCTCTTTTGGCA
mdm-MIR83N cme-miR399d TGCCAAAGGAGAGTTGCCCTT CONSERVED MDP0000248808ABC transporter G family member 11
E-value: 0.0
more		 3 17.489 1 - 21 698 - 718 Cleavage 
TTCCCGTTGAGAGGAAACCGT
:: :: :.:::::.:::::::
AACGGAAGCTCTCTTTTGGCA

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KNOWN: 0 (0)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 1 (6)
NOVEL: 0 (0)