Malus Domestica - miRNA targets

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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all Help

name	mature homolog	mature	mature status	target	best UniProt hit	expectation	UPE	miRNA start-end	target start-end	inhibition	miRNA:target duplex
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	CN858775	no hits with E-value < 1e-10	3	19.315	1 - 21	120 - 140	Cleavage	CGCACGAGAGAGAGGAACAGT ::::::.:::::.:::::.. TCGTGCTTTCTCTTCTTGTTG
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	TC94458	no hits with E-value < 1e-10	3	12.373	1 - 21	588 - 608	Cleavage	CGCACGAGAGAGAGGAACAGT :.:: .:::::::.:::::.: GTGTATTCTCTCTTCTTGTTA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	CV629858	no hits with E-value < 1e-10	3	11.068	1 - 21	9 - 29	Cleavage	CGCACGAGAGAGAGGAACAGT ::::: :::.:::::: :::: GCGTGGTCTTTCTCCTCGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	TC74079	no hits with E-value < 1e-10	3	14.857	1 - 20	415 - 435	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	TC92994	no hits with E-value < 1e-10	3	14.827	1 - 20	539 - 559	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	TC69221	no hits with E-value < 1e-10	3	22.301	1 - 20	256 - 276	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	TC83216	no hits with E-value < 1e-10	3	10.164	1 - 21	1039 - 1058	Translation	CGCACGAGAGAGAGGAACAGT :::::.:::: ::.::::::: GCGTGTTCTCNCTTCTTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000173587	no hits with E-value < 1e-10	2.5	19.779	1 - 21	611 - 631	Cleavage	CGCACGAGAGAGAGGAACAGT :::::::::::::::: ::: GCGTGCTCTCTCTCCTCGTCT
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000249364	4-coumarate--CoA ligase-like 1 E-value: 9e-91 more	3	13.623	1 - 20	3013 - 3033	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000155354	Squamosa promoter-binding-like protein 12 E-value: 8e-63 more	3	14.581	1 - 20	1435 - 1455	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000262141	Squamosa promoter-binding-like protein 7 E-value: 1e-34 more	3	15.959	1 - 20	1144 - 1164	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000297978	Squamosa promoter-binding-like protein 14 E-value: 4e-63 more	3	16.576	1 - 20	1093 - 1113	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA
mdm-MIR535b	mdm-miR535b	TGACAAGGAGAGAGAGCACGC	KNOWN	MDP0000176265	Squamosa promoter-binding-like protein 16 E-value: 6e-40 more	3	24.672	1 - 20	1003 - 1023	Cleavage	GCACGAGAGAGAGGANACAGT :::::::::::::.: ::::: CGTGCTCTCTCTCTTCTGTCA

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KNOWN: 1 (13)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 0 (0)