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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN CN848713no hits with E-value < 1e-10 2.5 23.616 1 - 20 345 - 364 Cleavage 
ATCACGGTAGAGAGGACGCT
 :: :::::::::.::::::
CAGCGCCATCTCTTCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN TC70361no hits with E-value < 1e-10 3 24.227 1 - 20 21 - 40 Cleavage 
ATCACGGTAGAGAGGACGCT
:.:::::.::::: :::.::
TGGTGCCGTCTCTACTGTGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN TC85425no hits with E-value < 1e-10 3 22.496 1 - 20 130 - 149 Cleavage 
ATCACGGTAGAGAGGACGCT
:.:::::.::::: :::.::
TGGTGCCGTCTCTACTGTGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN CN871127no hits with E-value < 1e-10 3 13.141 1 - 20 72 - 91 Cleavage 
ATCACGGTAGAGAGGACGCT
:. ::.: ::::::::::::
TGTTGTCCTCTCTCCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000258197Calcium-transporting ATPase 10, plasma membrane-type
E-value: 4e-63
more		 2 23.858 1 - 20 1018 - 1037 Cleavage 
ATCACGGTAGAGAGGACGCT
 :: ::::::::::::::::
GAGCGCCATCTCTCCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000237183no hits with E-value < 1e-10 2 20.291 1 - 20 202 - 221 Translation 
ATCACGGTAGAGAGGACGCT
:.:::.:::: :::::::::
TGGTGTCATCCCTCCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000375136no hits with E-value < 1e-10 2.5 19.974 1 - 20 268 - 287 Cleavage 
ATCACGGTAGAGAGGACGCT
 :: :.::::::::::::::
CAGCGTCATCTCTCCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000230664no hits with E-value < 1e-10 2.5 21.053 1 - 20 264 - 283 Cleavage 
ATCACGGTAGAGAGGACGCT
 .: ::::::::::::::::
CGGCGCCATCTCTCCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000159221no hits with E-value < 1e-10 3 13.942 1 - 20 216 - 235 Cleavage 
ATCACGGTAGAGAGGACGCT
:.::::: :::: .:::.::
TGGTGCCNTCTCCTCTGTGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000199558no hits with E-value < 1e-10 3 6.676 1 - 20 98 - 117 Cleavage 
ATCACGGTAGAGAGGACGCT
: :: ::.:::::.::::::
TCGTCCCGTCTCTTCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000213015no hits with E-value < 1e-10 3 24.384 1 - 20 2375 - 2394 Cleavage 
ATCACGGTAGAGAGGACGCT
: :: ::::::::.:::.::
TCGTTCCATCTCTTCTGTGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000265483no hits with E-value < 1e-10 3 6.691 1 - 20 47 - 66 Cleavage 
ATCACGGTAGAGAGGACGCT
: :: ::.:::::.::::::
TCGTCCCGTCTCTTCTGCGA
mdm-MIR3627b mdm-miR3627a TCGCAGGAGAGATGGCACTA KNOWN MDP0000300919no hits with E-value < 1e-10 3 6.686 1 - 20 48 - 67 Cleavage 
ATCACGGTAGAGAGGACGCT
: :: ::.:::::.::::::
TCGTCCCGTCTCTTCTGCGA

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KNOWN: 1 (13)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 0 (0)