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Malus Domestica - miRNA targets Filter by mature miRNA sequence or return to all        Help


name

mature homolog

mature

mature status

target

best UniProt hit

expectation

UPE

miRNA start-end

target start-end

inhibition

miRNA:target duplex
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN EB117521no hits with E-value < 1e-10 3 15.264 1 - 22 224 - 245 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAACAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN TC66273no hits with E-value < 1e-10 3 23.22 1 - 22 431 - 452 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAACAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN TC83769no hits with E-value < 1e-10 3 20.473 1 - 22 2096 - 2117 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAGCAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN MDP0000249678DNA-directed RNA polymerase III subunit RPC3
E-value: 4e-25
more		 0 21.864 1 - 22 339 - 360 Cleavage 
TCTAGTTACGCTAGGGAAACCT
::::::::::::::::::::::
AGATCAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN MDP0000469943Protein AUXIN SIGNALING F-BOX 2
E-value: 4e-179
more		 3 23.22 1 - 22 1420 - 1441 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAACAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN MDP0000268652Protein AUXIN SIGNALING F-BOX 2
E-value: 0.0
more		 3 20.475 1 - 22 1801 - 1822 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAGCAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN MDP0000203334Protein AUXIN SIGNALING F-BOX 2
E-value: 0.0
more		 3 23.22 1 - 22 2158 - 2179 Cleavage 
TCTAGTTACGCTAGGGAAACCT
. : ::::::::::::::::::
GAAACAATGCGATCCCTTTGGA
mdm-MIR393f osa-miR393a TCCAAAGGGATCGCATTGATCT KNOWN MDP0000191749no hits with E-value < 1e-10 3 18.334 1 - 22 1727 - 1748 Cleavage 
TCTAGTTACGCTAGGGAAACCT
::: :::: .:::.::::::::
AGAGCAATATGATTCCTTTGGA

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KNOWN: 1 (8)
KNOWN and CONSERVED: 0 (0)
CONSERVED: 0 (0)
NOVEL: 0 (0)